Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E07
         (1014 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.15 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.60 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect(2) = 0.15
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 475 SXGXGXXPPPPPPP 516
           S   G  PPPPPPP
Sbjct: 300 SANGGLPPPPPPPP 313



 Score = 24.2 bits (50), Expect(2) = 0.15
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 496 PPPPPPPXXFF 528
           PPPPPPP   F
Sbjct: 308 PPPPPPPSNDF 318


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 487 GXXPPPPPPPXXFFXXXPPP 546
           G  PPPPPPP       PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 481 GXGXXPPPPPPP 516
           G G  PPPPPPP
Sbjct: 772 GAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 487 GXXPPPPPPPXXFFXXXPPP 546
           G  PPPPPP        PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 487 GXXPPPPPPPXXFFXXXPPP 546
           G  PPPPPPP       PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,849
Number of Sequences: 5004
Number of extensions: 21094
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)