Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E06
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    27   2.8  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.9  

>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 217 SVNKFTFNTFNKSRKHEFLKQ*IIFQNFFKYVN 119
           S+N F   T ++SRK +FL   ++ Q     VN
Sbjct: 108 SLNTFALTTEDRSRKSDFLNSFVLMQTVSNIVN 140


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 244 FKQQQRKNISVNKFTFNTFNKSRKHEFLKQ*IIFQNFFKYVNRYAYV 104
           FK QQ+K +++NK     F KS   +++   I  +  FK + R+  V
Sbjct: 163 FKHQQKKIVAINK---GRFPKSLLLQYVPSNISSERLFKTLKRHGLV 206


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/61 (32%), Positives = 23/61 (37%)
 Frame = -1

Query: 729 GGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRGXGADSLMAXKTVPHLPR 550
           GG G  G      R G  GG + GRG R G  + G+ G      GA         PH   
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGR-GGARGGRGGSSGGRGGAKGGAKVIIEPHRHA 81

Query: 549 G 547
           G
Sbjct: 82  G 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,860
Number of Sequences: 5004
Number of extensions: 46128
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)