Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E06
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883...    38   0.015
06_01_0760 - 5676973-5677830                                           32   0.74 
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    31   0.97 
06_02_0175 - 12624608-12625297                                         29   3.9  
10_08_0227 - 16004868-16005449                                         29   5.2  
09_02_0343 + 7514514-7514948                                           29   6.9  
09_02_0136 + 4747985-4748419                                           28   9.1  
07_03_0131 - 14004278-14004712                                         28   9.1  
02_04_0142 + 20167876-20169108                                         28   9.1  

>03_06_0273 +
           32787021-32787434,32788096-32788221,32788305-32788378,
           32788468-32788537,32788622-32788677,32788762-32788833,
           32788945-32789039,32789196-32789262,32789359-32789488,
           32789578-32789793,32789887-32790017,32790719-32790893,
           32790977-32791067,32792151-32792308,32792763-32792951,
           32793066-32793125
          Length = 707

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 705 PAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRGXGADSLMAXKTVP 562
           PA R RTG  GG   GRG +      G+  L PRG G  ++   K  P
Sbjct: 33  PAPRGRTGRRGGAAAGRGNKTVAEGGGRKALKPRGKGCRAVDLCKDQP 80


>06_01_0760 - 5676973-5677830
          Length = 285

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = -1

Query: 783 GGYXPXFX-VG*TGIYPAFGGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXP 607
           GGY P +   G +G Y   GG+G  G       +G   G   G G+  G   Y   G  P
Sbjct: 184 GGYGPYYGPYGGSGAYAQGGGQGGGGGGGQNGGSGQGSGSGSGYGQAGGYGPY-YGGYWP 242

Query: 606 RGXG 595
            G G
Sbjct: 243 YGGG 246


>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
            27125387-27125656,27126027-27126377,27126480-27126757,
            27126887-27128330
          Length = 1398

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
 Frame = -1

Query: 843  FXGLRGPFGWPFLXXXCFFPGGYXPXFXVG*TGIYP-AFGGEGXXGXPAXRERTGXAGGV 667
            F G  GP G+        F G   P    G  G  P +FGG G  G      R G + G 
Sbjct: 1066 FGGREGPVGFGGQESPGGFGGRKGPGAFEGREGAAPGSFGGRGGRGPGGFGGRGGGSPGG 1125

Query: 666  QVGRGKREGXXQYGKTG 616
              GRG R     +G  G
Sbjct: 1126 FGGRGGRGDSHGFGGRG 1142


>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 729 GGEGXXGXPAXRERTGXAGGVQVGRGKREG 640
           GGEG  G    RER G  GG   G G+R G
Sbjct: 149 GGEGRKGIRTEREREGVGGG---GAGRRHG 175


>10_08_0227 - 16004868-16005449
          Length = 193

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 21/65 (32%), Positives = 26/65 (40%)
 Frame = -1

Query: 747 GIYPAFGGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRGXGADSLMAXKT 568
           G YP +GG    G        G AGGV       +G   YG  G    G G+ S +A   
Sbjct: 102 GYYPGYGGHASAGGGGGGNGGGQAGGV-------DGSGGYGTGG----GNGSGSSVANNG 150

Query: 567 VPHLP 553
            P+ P
Sbjct: 151 TPNTP 155


>09_02_0343 + 7514514-7514948
          Length = 144

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -1

Query: 756 G*TGIYPAFGGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRG 601
           G  G   A GG+G  G  +  E     GG + GR +R      G TG   RG
Sbjct: 90  GRRGHCDAGGGDGATGWRSGEEGEAAGGGRRHGRERRTAGRGLGTTGDRGRG 141


>09_02_0136 + 4747985-4748419
          Length = 144

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 735 AFGGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRG 601
           A GG+G  G  +  E     GG + GR +R      G TG   RG
Sbjct: 97  AGGGDGATGRRSGEEGEAAGGGRRHGRERRTAGRGLGTTGDRGRG 141


>07_03_0131 - 14004278-14004712
          Length = 144

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 735 AFGGEGXXGXPAXRERTGXAGGVQVGRGKREGXXQYGKTGLXPRG 601
           A GG+G  G  +  E     GG + GR +R      G TG   RG
Sbjct: 97  AGGGDGATGRRSGEEGEAAGGGRRHGRERRTAGRGLGTTGDRGRG 141


>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 549 HGGGVGXFXLPLMNRPXPP 605
           HGGGVG F L    +P PP
Sbjct: 15  HGGGVGAFDLEATMQPPPP 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,274
Number of Sequences: 37544
Number of extensions: 341690
Number of successful extensions: 637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)