Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E04
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   2.6  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   2.6  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   4.5  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   5.9  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   5.9  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 182  AQLTIIMQMMATNTIFVKYIFKT--TCGLYGFYT*IIHLIYLRFYNRNQI 39
            A ++  +  +A+N  ++KY+F+T     + G Y  I H I L  ++  Q+
Sbjct: 2123 APISSAVDTLASNISYIKYVFETMGKIEIDGNYMYIAHAIILALFSPRQL 2172


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 155 MATNTIFVKYIFKTTCGLYGFYT*IIHL 72
           +A    FVK+I K +C ++G Y   I+L
Sbjct: 140 IANGVYFVKHITKFSCEIFGLYVAFIYL 167


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 582 SVGMVSVKKTYHTKDVIVRPKSEIEIHXY 668
           ++G++S  K +HT D+I+  ++    H Y
Sbjct: 402 NIGVISGIKQFHTGDIIINKENSKNFHEY 430


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 186 GSTAHNH-YANDGDKYYFCKIHF 121
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
 Frame = -2

Query: 273 EYVDCWASADDRIANSLTHTFKLFKKVPSGSTAHNHYANDGDKY---YFCKIHFQNDLWA 103
           E V C  ++++++    +H     K    G+T   H+    D Y   YF K  F  ++  
Sbjct: 191 EIVFCAIASNEQVRGYGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQGFTKEITL 250

Query: 102 XRILHIDY 79
            + + + Y
Sbjct: 251 DKSIWVGY 258


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 742 SWFIFLRYYCCDNYFY 695
           S+  ++ +YC DNY+Y
Sbjct: 375 SFLFYITFYCWDNYYY 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,105
Number of Sequences: 5004
Number of extensions: 61535
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)