Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E04
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    29   4.2  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    29   4.2  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    29   5.5  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  ESVXPTSRFENVFYKNSICRHHLHNDCELC 182
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  ESVXPTSRFENVFYKNSICRHHLHNDCELC 182
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 93  ESVXPTSRFENVFYKNSICRHHLHNDCELC 182
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 485 YYTIFLVVLYCFFLVILALFRYLPAMVEI 571
           Y+  F      FFL +LA F Y+P M+ I
Sbjct: 193 YFIYFAFYYTIFFLPVLASFLYIPIMISI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,699
Number of Sequences: 27780
Number of extensions: 337614
Number of successful extensions: 963
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)