Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E03
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.014
03_05_0294 + 22855503-22855946,22856346-22856399 34 0.13
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.22
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 31 1.6
06_01_0059 - 510856-511499,511595-511805 29 4.8
04_03_0661 - 18468244-18469580,18469610-18469619 29 4.8
11_02_0012 - 7346282-7347136,7347234-7347593 29 6.4
10_05_0109 - 9248031-9248276,9250196-9250471 29 6.4
11_01_0771 + 6453130-6454488 28 8.4
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 247 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQESTHTY 381
+NV SPL + + LSL +GAG +++++ LGG + E H +
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAF 79
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 34.3 bits (75), Expect = 0.13
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Frame = +1
Query: 238 ADDKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYG--LLNQRYA 405
A NV SPL + + LSL +GAG +++++ +LG G E H + ++ A
Sbjct: 41 AGGSNVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLA 100
Query: 406 EFDP---KFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF 528
+ P + A+ +++ L +F A +++E +++F
Sbjct: 101 DSSPAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 33.5 bits (73), Expect = 0.22
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Frame = +1
Query: 244 DKNVIASPLGVMLLLSLYESGAGAQSKEEIREILG--GGEAQESTHTYGLLNQRYAEFDP 417
DKN+ SPL + L+L +GA ++ ++I LG GG A + ++ L + P
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 418 ------KFLTVANKIYVSDQYKLADAFSR-TANLFRSEVDNINF 528
+ AN ++V +L A++R A+ +R+E ++F
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSF 134
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 367 TLEPPLPQGFPLSLPWTVHRLQTRTRKAAAS 275
+L PPLP G PLS P+ QT + A S
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEKAAPLS 781
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +1
Query: 277 MLLLSLYESGAGAQSKEEIREILGGGEAQESTHTYGLLNQRYAEFD-PKFLTVANKIYVS 453
+LL + GAG S ++ GGG ++ H +G+ Q +A D LTV Y +
Sbjct: 197 LLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYST 256
Query: 454 DQYKL--ADAFS 483
Q + +DA S
Sbjct: 257 PQQTIIVSDAIS 268
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 452 PTSISWPTRSPEQRICSEAKWTTLTSALRRMPADIINRWADXQTQGPIKT 601
P S P+ + + SEA+ L AL+ P D RW P KT
Sbjct: 377 PVSNGTPSGTADPEAWSEAQVLALVQALKAFPKDASQRWERVAAAVPGKT 426
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 217 LKESYNLADD-----KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 366
L+ + LADD +NV+ SP+ + L+L SGA + +E+ +LG +
Sbjct: 16 LRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDD 70
>10_05_0109 - 9248031-9248276,9250196-9250471
Length = 173
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 541 NAR*YHQPLGGRXDSRTHKDSWSAKTKLXPATXVA 645
N R +H PL G D+ T WS ++ L A VA
Sbjct: 44 NGRRHHGPLLGSKDTTTGNAPWSCRSTLPQAPSVA 78
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 247 KNVIASPLGVMLLLSLYESGAGAQSKEEIREILGGGEAQE 366
+N+ SPL V LSL +GA + +EI +LG +
Sbjct: 37 RNLAFSPLSVHAALSLAAAGAAGGTLDEILAVLGAASRDD 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,013,730
Number of Sequences: 37544
Number of extensions: 492748
Number of successful extensions: 1295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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