Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E02
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 296 2e-81
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 296 2e-81
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 296 2e-81
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 65 1e-11
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 30 0.36
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.84
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 1.1
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.8
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.8
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 26 7.8
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 296 bits (727), Expect = 2e-81
Identities = 130/185 (70%), Positives = 156/185 (84%)
Frame = +1
Query: 97 RDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 276
R+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDR
Sbjct: 63 RNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDR 122
Query: 277 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAG 456
G L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAG
Sbjct: 123 GALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAG 182
Query: 457 RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIXXASTVKRGTSAGPKVGLIAARRT 636
RA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+ ++TV R ++ G KVGLIAARRT
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Query: 637 GRIPG 651
G + G
Sbjct: 243 GLLRG 247
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 296 bits (727), Expect = 2e-81
Identities = 130/185 (70%), Positives = 156/185 (84%)
Frame = +1
Query: 97 RDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 276
R+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDR
Sbjct: 63 RNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDR 122
Query: 277 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAG 456
G L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAG
Sbjct: 123 GALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAG 182
Query: 457 RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIXXASTVKRGTSAGPKVGLIAARRT 636
RA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+ ++TV R ++ G KVGLIAARRT
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Query: 637 GRIPG 651
G + G
Sbjct: 243 GLLRG 247
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 296 bits (727), Expect = 2e-81
Identities = 130/185 (70%), Positives = 156/185 (84%)
Frame = +1
Query: 97 RDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDR 276
R+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDR
Sbjct: 63 RNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDR 122
Query: 277 GRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAG 456
G L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAG
Sbjct: 123 GALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAG 182
Query: 457 RAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIXXASTVKRGTSAGPKVGLIAARRT 636
RA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+ ++TV R ++ G KVGLIAARRT
Sbjct: 183 RAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRT 242
Query: 637 GRIPG 651
G + G
Sbjct: 243 GLLRG 247
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 65.3 bits (152), Expect = 1e-11
Identities = 40/124 (32%), Positives = 68/124 (54%)
Frame = +1
Query: 193 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 372
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 373 KVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGN 552
+ + ++ +G+V+ + + KAGR+ ++ R P VRG AMNP +HPHGGG
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNPCDHPHGGGG 274
Query: 553 HQHI 564
+ I
Sbjct: 275 GKSI 278
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 419 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRL 249
PAT+P F P F +L SGL V+ +P+ + +P SRL
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.84
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PPP P P GPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 798 APPPXPXXPXAPXPGPPPP 854
AP P P P AP G PPP
Sbjct: 745 APAPIPVPPPAPIMGGPPP 763
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PPP P A P PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 90 HFPRSIQVQDKEGALHCSR 146
H+PRSI V ++G L C+R
Sbjct: 178 HYPRSILVDSEDGVLRCAR 196
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 430 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 522
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 27.9 bits (59), Expect = 1.9
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = -3
Query: 315 HSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPF-GS 139
H+ +S+ + +S + N T + S SNF S LS LA + S
Sbjct: 212 HNHPLSKSLEEQSSFLEQSKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLNKSRAS 271
Query: 138 NEELLPCLELVWIAGSVQQPKVHLXPGSWIINLKNS 31
+ + L I +P+VHL P + I+NL +S
Sbjct: 272 LQHKIMSLSRNIIRRVFHKPEVHLDPSASILNLSSS 307
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PP P P P PPPP
Sbjct: 1717 PPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PPP P P P PPP
Sbjct: 9 PPPPPPPPGFEPPSQPPP 26
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PPP P + P PPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 278 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 180
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 801 PPPXPXXPXAPXPGPPPP 854
PPP P GPPPP
Sbjct: 11 PPPNDSRSSTPATGPPPP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,078
Number of Sequences: 5004
Number of extensions: 66687
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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