Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D24
         (913 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.2  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    29   3.9  
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533...    27   4.3  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   9.0  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    24   9.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
 Frame = +3

Query: 732 ASXEXPAPXPPXPXHL---PXPXPRXLDP*XXXXXXXXXXXXXXXXXXXPPSXHTPXPPP 902
           AS   P P PP P      P P P+   P                    PP   +P PPP
Sbjct: 309 ASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368

Query: 903 XP 908
            P
Sbjct: 369 PP 370


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +1

Query: 154 VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVXQF 333
           +F  + +  L  K +E      L  +++ T F D+ ++ ++Y      +K  N DVV   
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGF-DMDDVVRKYIRYTLNEKPFNPDVVVDL 218

Query: 334 MEMYKMGMLPRGETFVHTNEL 396
           + + K  ML   E     NE+
Sbjct: 219 IHLRKASMLEDAEVAEILNEI 239


>07_03_1147 +
           24349811-24350161,24351031-24351366,24353260-24353376,
           24353585-24353647,24354066-24354139,24354216-24354306,
           24354791-24354850,24355270-24355462,24356242-24356522,
           24357435-24357536,24357664-24357774,24358410-24358475,
           24358562-24358660,24358757-24358788,24359171-24359274,
           24359380-24359507,24359625-24359756,24360051-24360359,
           24360887-24361071,24361161-24361263,24361407-24361552,
           24361748-24361827,24361901-24362103
          Length = 1121

 Score = 26.6 bits (56), Expect(2) = 4.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 729 WASXEXP--APXPPXPXHLPXPXPRXLDP 809
           W   + P  AP PP P  LP P PR L P
Sbjct: 37  WRLAKCPRFAPPPPQPT-LPPPPPRTLPP 64



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 870 PPSXHTPXPPPXP 908
           PP    P PPP P
Sbjct: 57  PPPRTLPPPPPPP 69


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +3

Query: 732 ASXEXPAPXPPXPXHLPXPXPRXLDP*XXXXXXXXXXXXXXXXXXXPPSXHTPXPPPXP 908
           AS    AP PP P     P P  ++P                    PP    P PPP P
Sbjct: 2   ASYRPYAPHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPP 60


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 23.8 bits (49), Expect(2) = 9.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 870 PPSXHTPXPPPXP 908
           PP  HT  PPP P
Sbjct: 414 PPPTHTHGPPPPP 426



 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 741 EXPAPXPPXP--XHLPXPXPRXLDP 809
           + PAP PP P    LP P P    P
Sbjct: 353 QPPAPPPPPPFAPTLPPPPPPRRKP 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,149
Number of Sequences: 37544
Number of extensions: 375547
Number of successful extensions: 1428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)