Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D23
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    26   8.2  

>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 316 PS*FLLDGAVGTSPGTGQYTSVDQERADELFSTSNRTFGSSPILMPMFMHSAVAI-PVMP 492
           P  F+  G VG S G   Y+S+     +E FS+       S ++ P+++  A+AI  V+P
Sbjct: 419 PPIFMFFGVVGISNGLVNYSSLIISEINENFSSVT----VSLLVAPIWVFDAIAILTVLP 474

Query: 493 IN 498
           ++
Sbjct: 475 LH 476


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 398 SARSWSTEVYCPVPGLVPTAPSSRN 324
           S+ +W T  Y  V    P APS RN
Sbjct: 438 SSPAWGTSGYYDVSSTSPVAPSDRN 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,344
Number of Sequences: 5004
Number of extensions: 59075
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)