Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D23
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical pr...   172   3e-43
AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical...   172   3e-43
AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore...    29   4.4  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    29   4.4  

>Z81453-8|CAB03798.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  172 bits (418), Expect = 3e-43
 Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
 Frame = -3

Query: 680 FTXAPVXGGVMGAQNVTXAFMAG-GXKEDFERSLXLLKVMGXKQFHCGQIGSGQVAKLTN 504
           +  AP+ GGV GAQ  T  FM G G    F+R+  +L +MG    + G +G+G  AK+ N
Sbjct: 116 YIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICN 175

Query: 503 NMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRN 324
           NML+GI  +A AE MN+GI MGL+ K L  ++N SS R WS++ Y PVPG++   PS R 
Sbjct: 176 NMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRG 235

Query: 323 YDGGFKNELMVKDLELASGMALGIRSPIPLGAVAXQLYRIV-QSRGYGQKDFSFVFQLLK 147
           Y GGF   LM KDL LA   +   ++P P+G++A Q+YRI+ +   Y  KDF  V+Q LK
Sbjct: 236 YAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLK 295

Query: 146 EEN 138
           ++N
Sbjct: 296 KQN 298


>AL031630-23|CAA21003.1|  299|Caenorhabditis elegans Hypothetical
           protein B0250.5 protein.
          Length = 299

 Score =  172 bits (418), Expect = 3e-43
 Identities = 83/183 (45%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
 Frame = -3

Query: 680 FTXAPVXGGVMGAQNVTXAFMAG-GXKEDFERSLXLLKVMGXKQFHCGQIGSGQVAKLTN 504
           +  AP+ GGV GAQ  T  FM G G    F+R+  +L +MG    + G +G+G  AK+ N
Sbjct: 116 YIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICN 175

Query: 503 NMLMGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRN 324
           NML+GI  +A AE MN+GI MGL+ K L  ++N SS R WS++ Y PVPG++   PS R 
Sbjct: 176 NMLLGIQMVAVAETMNLGISMGLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRG 235

Query: 323 YDGGFKNELMVKDLELASGMALGIRSPIPLGAVAXQLYRIV-QSRGYGQKDFSFVFQLLK 147
           Y GGF   LM KDL LA   +   ++P P+G++A Q+YRI+ +   Y  KDF  V+Q LK
Sbjct: 236 YAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQFLK 295

Query: 146 EEN 138
           ++N
Sbjct: 296 KQN 298


>AC087079-14|AAM81101.1|  392|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform b protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 659 GGVMGAQNVTXAFMAGGXKEDFERSLXLLKVMGXKQ--FHCGQIGSGQVAKLTNNMLMGI 486
           GG+ G + +  AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 485 TGMAT 471
              AT
Sbjct: 325 PQCAT 329


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 659 GGVMGAQNVTXAFMAGGXKEDFERSLXLLKVMGXKQ--FHCGQIGSGQVAKLTNNMLMGI 486
           GG+ G + +  AF+  G +E F+     +  M   Q  +HC + G  + A  T N L   
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324

Query: 485 TGMAT 471
              AT
Sbjct: 325 PQCAT 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,533
Number of Sequences: 27780
Number of extensions: 353897
Number of successful extensions: 755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)