Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D22
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   6.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   8.1  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -1

Query: 402 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 235
           +V S +  L + + NI   GTLT  +  ++W+ +     N  +        +  WY
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 616  QGQPXW-SIIYQWRYNH 569
            + QP W +I++ WRY H
Sbjct: 1014 ESQPCWYNILFSWRYKH 1030


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,040
Number of Sequences: 5004
Number of extensions: 64164
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)