Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D22
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539...    54   2e-07
02_03_0240 - 16739628-16740369,16740392-16740978                       28   8.5  

>07_03_0368 +
           17351199-17351351,17352166-17352243,17353774-17353927,
           17353997-17354019,17354242-17354319,17354407-17354466,
           17354745-17354805,17355080-17355243
          Length = 256

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 38/133 (28%), Positives = 55/133 (41%)
 Frame = +1

Query: 310 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAAL 489
           PQI KIL+  S  G+++    LE+   T   AY    G PFSA+GE  FL IQ  +    
Sbjct: 76  PQILKILKHGSVRGLSVASFELEVVGYTIALAYCIHKGLPFSAYGELAFLLIQADLFNVC 135

Query: 490 VLHYGGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTXQAVPVPIILIXKSXX*ERTTKM 669
                       + LS YC +   ++ G     +     A    I    +     +    
Sbjct: 136 ------------LCLSRYCGLAPTVLGGKIDPALFEVLYASQHAIFFFARLPQIWKNFMN 183

Query: 670 AXLGQLSFITCFL 708
              G+LSF+TCF+
Sbjct: 184 KGTGELSFLTCFM 196


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 442 GEGTFLAIQTAMIAALVLHYGGAPMKGGI 528
           GE TF      + AAL  H+GG  M  G+
Sbjct: 264 GESTFQEASAVISAALARHFGGDDMPSGV 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,528,282
Number of Sequences: 37544
Number of extensions: 389070
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)