Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D22
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical pr...    87   2e-17
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    31   1.1  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    31   1.1  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    31   1.1  
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.        31   1.1  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    31   1.1  

>U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical
           protein F38E1.9 protein.
          Length = 238

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 53/187 (28%), Positives = 81/187 (43%)
 Frame = +1

Query: 148 MAEILKGLLLGVLSQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKI 327
           M +I++ L  G     C+ E  + +NF    C K+                   PQI KI
Sbjct: 1   MNDIIQSLFPG----NCFEELLINFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKI 56

Query: 328 LQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGG 507
             ++SA+GI+     L L       +YSY  GF FS WG+  F+A+Q  +I   +  + G
Sbjct: 57  QAARSAQGISAASQLLALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSG 116

Query: 508 APMKGGIFLSVYCAIVSVLVSGYTSTDILWTXQAVPVPIILIXKSXX*ERTTKMAXLGQL 687
             M    FL +  A+   +VS       L   Q   +PI+++ K     +  +    GQL
Sbjct: 117 QTMLSVGFLGIVSAVAYGVVSKSIPMQTLTAVQTAGIPIVVVSKLLQISQNYRAQSTGQL 176

Query: 688 SFITCFL 708
           S I+ FL
Sbjct: 177 SLISVFL 183


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 439  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT---- 600
            W    F+ +  ++  ALV  +GG  +  G FL ++ A  ++ +L  GYT   +LWT    
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWTFVQS 1183

Query: 601  XQAVPVPIILI 633
             +A+P   +LI
Sbjct: 1184 FKALPYVCLLI 1194


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 439  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT---- 600
            W    F+ +  ++  ALV  +GG  +  G FL ++ A  ++ +L  GYT   +LWT    
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWTFVQS 1183

Query: 601  XQAVPVPIILI 633
             +A+P   +LI
Sbjct: 1184 FKALPYVCLLI 1194


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 439  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT---- 600
            W    F+ +  ++  ALV  +GG  +  G FL ++ A  ++ +L  GYT   +LWT    
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWTFVQS 1302

Query: 601  XQAVPVPIILI 633
             +A+P   +LI
Sbjct: 1303 FKALPYVCLLI 1313


>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
          Length = 1053

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 439 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT---- 600
           W    F+ +  ++  ALV  +GG  +  G FL ++ A  ++ +L  GYT   +LWT    
Sbjct: 731 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWTFVQS 789

Query: 601 XQAVPVPIILI 633
            +A+P   +LI
Sbjct: 790 FKALPYVCLLI 800


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = +1

Query: 439  WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT---- 600
            W    F+ +  ++  ALV  +GG  +  G FL ++ A  ++ +L  GYT   +LWT    
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWTFVQS 1302

Query: 601  XQAVPVPIILI 633
             +A+P   +LI
Sbjct: 1303 FKALPYVCLLI 1313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,526
Number of Sequences: 27780
Number of extensions: 368671
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)