Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D20
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   3.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   4.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   4.5  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   4.5  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    26   7.8  

>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 357 GRPRTVATIYHGISTTGSVGSRRKTSQEPPQSSPLAWTTSSGAPRSSTERPWV 515
           G P       +G++T   +GS   T    P +SPL  T S    RSS+   WV
Sbjct: 205 GSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR-TPSRTLSRSSSHYLWV 256


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = +2

Query: 98   SFFPCLLFVFLGSVWARTATKPQEISGP------ITSLSDKNARDKAKVHPAFA 241
            S FP + + +LG+    T ++  E+         ++ +S  NA++KAK++  FA
Sbjct: 2116 SIFPSISYAYLGNWLYTTKSEKTELVSKNYFEKSLSHMSHLNAKEKAKIYCMFA 2169


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 184 DRPAYLLRLGRRPCPDGSQENKKETRKK*SSSLNTS 77
           + P  LLR   +  PD  +E    T+KK   SL+TS
Sbjct: 127 ESPGKLLRTSVKQEPDSEEEIDSPTKKKSFKSLDTS 162


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 283 ELRTNTRCSEGHRKILQ--RRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRN 450
           E + N     G   ++Q  +R ++   + +GQ +  I G P  +R  V+  R+RS R+
Sbjct: 16  EEKLNDLSKSGENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNG-RIRSYRS 72


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 84  FKDEDHFFRVSFLFSWDPSG 143
           ++ E+ FFR++FL +W+  G
Sbjct: 169 YRKEEQFFRMAFLVAWNGLG 188


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +2

Query: 308 QKDIGKFYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAILTVGLDDKFGGA 487
           +KD+ +  + DS  +    ++ R+ L   IHY+   +S + +  +A  +   L ++    
Sbjct: 277 KKDLQEVLQSDSNHVPSVLTELRSGLDQTIHYFNAVQSYKSKVDSATSILEALAEELNKN 336

Query: 488 AVQHRETMGHESALXLSYFQTPL 556
            + ++    HE+A  L   QT L
Sbjct: 337 QLTNQR---HEAAHELMRAQTGL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,413
Number of Sequences: 5004
Number of extensions: 74212
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)