Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D20
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.7  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 477 NLSSRPTVRIAAAPDSSCVDSRP 409
           N S  P  RIA+AP SS   S P
Sbjct: 508 NSSPSPNPRIASAPSSSTSSSPP 530


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 291 NQYPLLRRT*ENSTKEIHTSFYGRPRTVA 377
           +QYPL+RRT E+   E        P  VA
Sbjct: 556 DQYPLMRRTMESVAAERLNKIGKNPNLVA 584


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 291 NQYPLLRRT*ENSTKEIHTSFYGRPRTVA 377
           +QYPL+RRT E+   E        P  VA
Sbjct: 524 DQYPLMRRTMESVAAERLNKIGKNPNLVA 552


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 283 LYSPYLHTGCSADIGKSRMDFGFVTGV 203
           L+  ++H G    +G S +  GF  G+
Sbjct: 87  LFKGFVHLGAGLAVGFSGLAAGFAIGI 113


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 669 VDPQIASMNKGXCFXLSLHN 728
           +D  I+  N+G C  +S+H+
Sbjct: 153 LDDSISQANEGFCAVISMHD 172


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 669 VDPQIASMNKGXCFXLSLHN 728
           +D  I+  N+G C  +S+H+
Sbjct: 148 LDDSISQANEGFCAVISMHD 167


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 250 QNSRCANMENTE 285
           +NSRCAN +N +
Sbjct: 410 RNSRCANFDNQD 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,847
Number of Sequences: 438
Number of extensions: 4595
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)