Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D19
(1446 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 39 0.010
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 36 0.094
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 35 0.16
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.38
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.38
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.88
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.88
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.88
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.88
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 1.2
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 31 2.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 2.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 2.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 3.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 3.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 3.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 3.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 4.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 4.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 6.2
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 6.2
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 6.2
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 8.2
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 29 8.2
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 8.2
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 8.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 8.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 8.2
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 38.7 bits (86), Expect = 0.010
Identities = 25/82 (30%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPP---XSXTXXAXXRXPPSXXLXXPXTXX 842
P PP R PPPPP P T P PP T + R PP P +
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPP----RTPPSPE 179
Query: 843 PXXPXXLXGAXIXPXPXPXTHH 908
P P + I P P H
Sbjct: 180 PRNPPRTPPSPIPPPPPRLNSH 201
Score = 34.3 bits (75), Expect = 0.22
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXPXX 851
P PP PPPP PP P PP S PPS P T
Sbjct: 123 PPPPPPRKSRAGGSSPPPP---PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPE 179
Query: 852 PXXLXGAXIXPXPXP 896
P P P P
Sbjct: 180 PRNPPRTPPSPIPPP 194
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 35.5 bits (78), Expect = 0.094
Identities = 26/97 (26%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Frame = +2
Query: 713 PXPXPNXXPSXHXPXPPPPXIXHXXCXXSXXAXXXPP-----XAXXXXPXPPXXPXRGXN 877
P P P + H P PPPP S A PP P PP P G
Sbjct: 488 PPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGMA 547
Query: 878 IXXXXPXXPSPXXXXXXXSXXXXXXPXTPRXXXPXPP 988
P P P P P P PP
Sbjct: 548 NGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPPPPPP 584
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 34.7 bits (76), Expect = 0.16
Identities = 25/75 (33%), Positives = 25/75 (33%)
Frame = -3
Query: 919 GXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXG 740
G W G G GN G G G R GG GG G G
Sbjct: 61 GSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGG--GGGGRGGGGGGG 118
Query: 739 GXXVGGGGGRXXGXR 695
G GGGGGR G R
Sbjct: 119 GGRGGGGGGRGGGGR 133
Score = 32.3 bits (70), Expect = 0.88
Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = -3
Query: 808 GGXRXXAXXVXDXGGXWXGXVXGGXXVG--GGGGRXXGXRXLSGGXXGSXXAXXXG 647
GG R GG W G GG G GGGG G R GG G G
Sbjct: 65 GGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGG 120
Score = 29.1 bits (62), Expect = 8.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 1395 GXXVGGGGXXXXGGGWGAGXKRXXXWGXKXGXG 1297
G GG G GGG G G R WG G G
Sbjct: 47 GWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGG 79
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.38
Identities = 19/59 (32%), Positives = 21/59 (35%)
Frame = +3
Query: 669 LPXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXP 845
+P PP R P PPPPP P + PP A PPS P P
Sbjct: 333 MPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA----PPSGHGMIPPPPPP 387
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 1295 TPXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXPXTKTP 1411
TP P P + P P PPP PPP P +TP
Sbjct: 271 TPMPPPMPPTPGMT-PRPPPPPSSGMWPPPPPPPPGRTP 308
Score = 29.5 bits (63), Expect = 6.2
Identities = 21/88 (23%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXT-----XXAXXRXPPSXXLXXPXT 836
P PP P PPPP P P PP + PP + P
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Query: 837 XXPXXPXXLXGAXIXPXPXPXTHHHXSP 920
P P A P P +P
Sbjct: 347 MPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.38
Identities = 19/59 (32%), Positives = 21/59 (35%)
Frame = +3
Query: 669 LPXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXP 845
+P PP R P PPPPP P + PP A PPS P P
Sbjct: 343 MPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPA----PPSGHGMIPPPPPP 397
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 1295 TPXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXPXTKTP 1411
TP P P + P P PPP PPP P +TP
Sbjct: 281 TPMPPPMPPTPGMT-PRPPPPPSSGMWPPPPPPPPGRTP 318
Score = 29.5 bits (63), Expect = 6.2
Identities = 21/88 (23%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXT-----XXAXXRXPPSXXLXXPXT 836
P PP P PPPP P P PP + PP + P
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Query: 837 XXPXXPXXLXGAXIXPXPXPXTHHHXSP 920
P P A P P +P
Sbjct: 357 MPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.3 bits (70), Expect = 0.88
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXS 776
P PP P PPPPP PP P P S
Sbjct: 49 PICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPS 83
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 1304 PXFXPHXXXLXXPAPXPPPXXXXPPPP 1384
P F P P P PPP PPPP
Sbjct: 53 PQFCPPPPMCPPPPPPPPPPMCPPPPP 79
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/49 (30%), Positives = 17/49 (34%)
Frame = +3
Query: 1296 PLXLSSXPTXPASXXPHPXLHPPXXPHPPPXXXHXQKHPXXXLSXXHSF 1442
PL P P P P + PP P PPP P S S+
Sbjct: 42 PLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSY 90
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.88
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +3
Query: 645 APXXXAXXLPXXPPDXXRXPXXR---PPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPP 809
+P P PP P R PPPPPT PP PP PP
Sbjct: 246 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.88
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +3
Query: 645 APXXXAXXLPXXPPDXXRXPXXR---PPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPP 809
+P P PP P R PPPPPT PP PP PP
Sbjct: 267 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.88
Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Frame = +3
Query: 645 APXXXAXXLPXXPPDXXRXPXXR---PPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPP 809
+P P PP P R PPPPPT PP PP PP
Sbjct: 252 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXPXX 851
P PP P PPPPP PP T PP PP P
Sbjct: 717 PGLPPITGGPP---PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 852 PXXLXGAXIXPXPXP 896
P G P P P
Sbjct: 774 PPPPGGFKGGPPPPP 788
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXP 830
P PP P PPPP P P PP PP + P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Frame = +3
Query: 702 PXXRPPPPPTXXPPXT-XPXHXPPXS--XTXXAXXRXPPSXXLXXPXTXXPXXPXXLXGA 872
P PPPP PP T P PP PP P + P P G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 873 XIXPXPXP 896
P P P
Sbjct: 768 CPPPPPPP 775
Score = 25.4 bits (53), Expect(2) = 3.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 695 PXXXXTPXPXPNXXPSXHXPXPPPP 769
P P P P P P PPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPP 731
Score = 23.4 bits (48), Expect(2) = 3.0
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +2
Query: 848 PPXXPXRGXNIXXXXPXXPSPXXXXXXXSXXXXXXPXTPRXXXPXPP 988
PP P G P P P S P P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXPXX 851
P PP P PPPPP PP T PP PP P
Sbjct: 717 PGLPPITGGPP---PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 852 PXXLXGAXIXPXPXP 896
P G P P P
Sbjct: 774 PPPPGGFKGGPPPPP 788
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXP 830
P PP P PPPP P P PP PP + P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Frame = +3
Query: 702 PXXRPPPPPTXXPPXT-XPXHXPPXS--XTXXAXXRXPPSXXLXXPXTXXPXXPXXLXGA 872
P PPPP PP T P PP PP P + P P G
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Query: 873 XIXPXPXP 896
P P P
Sbjct: 768 CPPPPPPP 775
Score = 25.4 bits (53), Expect(2) = 3.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 695 PXXXXTPXPXPNXXPSXHXPXPPPP 769
P P P P P P PPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPPPPP 731
Score = 23.4 bits (48), Expect(2) = 3.0
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +2
Query: 848 PPXXPXRGXNIXXXXPXXPSPXXXXXXXSXXXXXXPXTPRXXXPXPP 988
PP P G P P P S P P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/75 (29%), Positives = 22/75 (29%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXPXX 851
P PP P PPPPP PP T PP PP P
Sbjct: 300 PGLPPITGGPP---PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 852 PXXLXGAXIXPXPXP 896
P G P P P
Sbjct: 357 PPPPGGFKGGPPPPP 371
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 672 PXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXP 830
P PP P PPPP P P PP PP + P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Frame = +3
Query: 702 PXXRPPPPPTXXPPXT-XPXHXPPXS--XTXXAXXRXPPSXXLXXPXTXXPXXPXXLXGA 872
P PPPP PP T P PP PP P + P P G
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Query: 873 XIXPXPXP 896
P P P
Sbjct: 351 CPPPPPPP 358
Score = 25.4 bits (53), Expect(2) = 3.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 695 PXXXXTPXPXPNXXPSXHXPXPPPP 769
P P P P P P PPPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPPPPP 314
Score = 23.4 bits (48), Expect(2) = 3.0
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +2
Query: 848 PPXXPXRGXNIXXXXPXXPSPXXXXXXXSXXXXXXPXTPRXXXPXPP 988
PP P G P P P S P P P PP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 30.7 bits (66), Expect = 2.7
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = +2
Query: 1295 TPXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXPXTKTPSXXS 1423
+P P P P PP PPPP P +TPS S
Sbjct: 335 SPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPSASS 377
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 30.7 bits (66), Expect = 2.7
Identities = 24/86 (27%), Positives = 25/86 (29%)
Frame = -3
Query: 895 GXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXGGXXVGGGG 716
G G G G G G GG D GG G + GG GGG
Sbjct: 121 GGGDGGGGYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGD 180
Query: 715 GRXXGXRXLSGGXXGSXXAXXXGAXY 638
G G GG G G Y
Sbjct: 181 G-GYGGGGFGGGGMGGYGGGMGGGGY 205
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.7 bits (66), Expect = 2.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 1298 PXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXP 1396
P P + P P PPP PPPP P
Sbjct: 564 PPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/102 (27%), Positives = 29/102 (28%)
Frame = -3
Query: 964 GGXGXXXXXX*XXXXGXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAX 785
GG G G W G G G P + G G G GG
Sbjct: 242 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG-----GGQGGWGG 296
Query: 784 XVXDXGGXWXGXVXGGXXVGGGGGRXXGXRXLSGGXXGSXXA 659
G W GG GGGGG G GG G A
Sbjct: 297 PQQQQQGGW-----GGPQQGGGGGGWGGQGQQQGGWGGQSGA 333
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -1
Query: 1380 GGGXXXXGGGWGAGXKRXXXWGXKXGXG 1297
GG GG WG G WG G G
Sbjct: 105 GGNNNGGGGNWGGGGNNDGGWGGNNGGG 132
Score = 29.9 bits (64), Expect = 4.7
Identities = 26/80 (32%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Frame = -3
Query: 889 GXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXX---AXXVXDXGGXWXGXVXGGXXVGGG 719
G GN G G G GG R + GG W G GG GGG
Sbjct: 111 GGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGG--NGGGGRGGG 168
Query: 718 GGRXXGXRXLSGGXXGSXXA 659
GGR G GG G A
Sbjct: 169 GGRGGG----GGGGAGERIA 184
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/102 (27%), Positives = 29/102 (28%)
Frame = -3
Query: 964 GGXGXXXXXX*XXXXGXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAX 785
GG G G W G G G P + G G G GG
Sbjct: 204 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG-----GGQGGWGG 258
Query: 784 XVXDXGGXWXGXVXGGXXVGGGGGRXXGXRXLSGGXXGSXXA 659
G W GG GGGGG G GG G A
Sbjct: 259 PQQQQQGGW-----GGPQQGGGGGGWGGQGQQQGGWGGQSGA 295
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/102 (27%), Positives = 29/102 (28%)
Frame = -3
Query: 964 GGXGXXXXXX*XXXXGXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAX 785
GG G G W G G G P + G G G GG
Sbjct: 242 GGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG-----GGQGGWGG 296
Query: 784 XVXDXGGXWXGXVXGGXXVGGGGGRXXGXRXLSGGXXGSXXA 659
G W GG GGGGG G GG G A
Sbjct: 297 PQQQQQGGW-----GGPQQGGGGGGWGGQGQQQGGWGGQSGA 333
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 4.7
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 1340 PAPXPPPXXXXPPPPTXXPXTKTP 1411
P P PPP PPPP P P
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPPAP 155
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +3
Query: 714 PPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXXPXTXXPXXPXXLXGAXIXPXPX 893
PPPPP PP PP + P L P P P + P P
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVP----PPPPLFSPSMILPPPPP 1394
Query: 894 P 896
P
Sbjct: 1395 P 1395
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 1298 PXPXFXPHXXXLXXPAPXPPPXXXXPPPPT 1387
P P L P P PPP PPPP+
Sbjct: 1585 PPPLMGGPPPRLGMPPPGPPPPNGGPPPPS 1614
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 6.2
Identities = 23/83 (27%), Positives = 23/83 (27%)
Frame = -3
Query: 895 GXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXGGXXVGGGG 716
G G G AP G G GG GG GG GGGG
Sbjct: 102 GGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGG 161
Query: 715 GRXXGXRXLSGGXXGSXXAXXXG 647
G G GG G G
Sbjct: 162 GCGGGGGGCGGGGGGGCGGGGGG 184
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/76 (31%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 895 GXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXX-AXXVXDXGGXWXGXVXGGXXVGGG 719
G G G AP G G GG A GG G GG GGG
Sbjct: 41 GCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGG 100
Query: 718 GGRXXGXRXLSGGXXG 671
GG G GG G
Sbjct: 101 GGCGGGGGGCGGGGGG 116
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 6.2
Identities = 24/76 (31%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 895 GXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXX-AXXVXDXGGXWXGXVXGGXXVGGG 719
G G G AP G G GG A GG G GG GGG
Sbjct: 41 GCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGG 100
Query: 718 GGRXXGXRXLSGGXXG 671
GG G GG G
Sbjct: 101 GGCGGGGGGCGGGGGG 116
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 29.5 bits (63), Expect = 6.2
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 1283 FFFXTPXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXPXTKTPS 1414
FFF P P P + P P PPP P TPS
Sbjct: 148 FFFDQPPPTPIPTPVPILEPPPPPPPVPPLSPLYKVLEIPATPS 191
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.5 bits (63), Expect = 6.2
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 1298 PXPXFXPHXXXLXXPAPXPPPXXXXPPPPTXXPXTKTPS 1414
P P P P PPP PPP KTPS
Sbjct: 72 PPPPLISILQQAPPPPPPPPPPTLKAPPPPPILGLKTPS 110
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical protein
C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 1295 TPXPXFXPHXXXLXXPAPXPPPXXX--XPPPPTXXPXTKTPS 1414
TP P P + P+P P P PPPP P TPS
Sbjct: 462 TPKPA-PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPS 502
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 29.1 bits (62), Expect = 8.2
Identities = 22/69 (31%), Positives = 23/69 (33%)
Frame = -3
Query: 853 GXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXGGXXVGGGGGRXXGXRXLSGGXX 674
G G G R GG R D GG G GG GG G G R +GG
Sbjct: 84 GNGGFGDNGGLRGGNGGGRGGNGGFDDNGGG-RGGNGGGRGGTGGFGDNGGGRGGNGGGR 142
Query: 673 GSXXAXXXG 647
G G
Sbjct: 143 GGNGGGNNG 151
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/83 (22%), Positives = 23/83 (27%)
Frame = +3
Query: 648 PXXXAXXLPXXPPDXXRXPXXRPPPPPTXXPPXTXPXHXPPXSXTXXAXXRXPPSXXLXX 827
P A P P + P P + PP T PP S P+
Sbjct: 436 PTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKS 495
Query: 828 PXTXXPXXPXXLXGAXIXPXPXP 896
P P P + P P P
Sbjct: 496 PPPPPPLPPIATPSSVPPPPPPP 518
Score = 29.1 bits (62), Expect = 8.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +2
Query: 1295 TPXPXFXPHXXXLXXPAPXPPPXXX--XPPPPTXXPXTKTPS 1414
TP P P + P+P P P PPPP P TPS
Sbjct: 469 TPKPA-PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPS 509
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 29.1 bits (62), Expect = 8.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 1395 GXXVGGGGXXXXGGGWGAG 1339
G GGGG GGGWG G
Sbjct: 218 GGGGGGGGGYGSGGGWGGG 236
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -3
Query: 919 GXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXG 740
G W G G G P + G G G GG G W G
Sbjct: 220 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG-----GGQGGWGGPQQQQQGGW-----G 269
Query: 739 GXXVGGGGGRXXGXRXLSGGXXGSXXA 659
G GGGGG G GG G A
Sbjct: 270 GPQQGGGGGGWGGQGQQQGGWGGQSGA 296
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 8.2
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -3
Query: 919 GXXW*WVXGXGXGNIXAPXRXXGXXGXXVXGXXRXXXGGXRXXAXXVXDXGGXWXGXVXG 740
G W G G G P + G G G GG G W G
Sbjct: 258 GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGG-----GGQGGWGGPQQQQQGGW-----G 307
Query: 739 GXXVGGGGGRXXGXRXLSGGXXGSXXA 659
G GGGGG G GG G A
Sbjct: 308 GPQQGGGGGGWGGQGQQQGGWGGQSGA 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,246
Number of Sequences: 27780
Number of extensions: 198094
Number of successful extensions: 4070
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2982
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4131451166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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