Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D17
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 165 6e-41
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 163 2e-40
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 142 3e-34
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 30 2.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 3.8
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 29 3.8
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 29 6.7
01_06_0048 + 25951544-25952074 28 8.8
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 165 bits (400), Expect = 6e-41
Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Frame = +3
Query: 81 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 260
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 261 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 440
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 441 IIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 590
IIK + C+R KQFHNS I+FPL R K TF RP+ +
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 163 bits (395), Expect = 2e-40
Identities = 75/173 (43%), Positives = 107/173 (61%), Gaps = 3/173 (1%)
Frame = +3
Query: 81 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 260
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 5 RFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAIN 64
Query: 261 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 440
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 441 IIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 590
IIK + C+R KQFH S I+FPL R K TF RP+ +
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 142 bits (345), Expect = 3e-34
Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 20/190 (10%)
Frame = +3
Query: 81 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 209
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFL
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64
Query: 210 RQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 389
R+LKK KK+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65 RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124
Query: 390 CYRDMGARHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLN 560
Y +M +RHR R IQIIK + C+R KQFHN +I+FPL R K
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKT 184
Query: 561 TFAYKRPSTY 590
TF RP+ +
Sbjct: 185 TFKASRPNLF 194
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 490 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVRHITIKPM*KW 642
S++ TT+ S P++C+ D R R +S C H T +PM +W
Sbjct: 410 SSAMTTSAMQSRSPSLCSACLDGY-ERERADMASSPGCGALHATEQPMSQW 459
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 416 QSPSSFNTDYQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 556
Q P S T+YQ SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 434 NTDYQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 544
N + G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 486 QVKQFHNSTIRFPLPKRVHHYK-RL-NTFAYKRPSTYFL*L*CTSHNNKTHVKMEKPPXP 659
+V FH ST+ F P R H + RL +F++ + FL CT+ N + + +KPP P
Sbjct: 288 KVSLFHVSTLDFGDPFRAHEMRCRLVASFSWHKFVGCFLLGSCTNSGNLSRYR-QKPPLP 346
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 208 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 116
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,252,904
Number of Sequences: 37544
Number of extensions: 536315
Number of successful extensions: 2155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -