Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D14
         (1001 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   4.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.9  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 786 RPFSPXXXPPTXPPXTPP 839
           RP SP   PP  PP   P
Sbjct: 22  RPHSPEPYPPRCPPIYEP 39


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 795 SPXXXPPTXPPXTPPP 842
           SP   PP  P  +PPP
Sbjct: 16  SPLLTPPHNPAYSPPP 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 835 PPPXXPXASXPXPXPLXXSPPPXXPRXPXPLPPXPP 942
           P    P  + P    L  + PP     P PLPP  P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,375
Number of Sequences: 336
Number of extensions: 2563
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28547508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)