Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D12
         (795 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.53 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.6  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 70  IYFAASPFSRLSS*FLKMLGAISRVGNRHFNP 165
           IYF A  F  +   F + + A+SR     FNP
Sbjct: 460 IYFVAESFDDMKDKFRRWVSAMSRPFEVRFNP 491


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 750 PPPPPPP 770
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 754 PPPPPPXXXKXF 789
           PPPPPP   + F
Sbjct: 731 PPPPPPPRVESF 742


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  PIFQTEQLISENVGGNKSSWKPAF*P 164
           P +QT+ L+S + GG   S+   F P
Sbjct: 188 PTYQTQGLLSPSYGGTTYSFTADFRP 213


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 715 GVXKXXPXPXXSXPPPPP 768
           G+    P P  S P PPP
Sbjct: 199 GLRNYGPEPVPSTPYPPP 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,790
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)