Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D12
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 0.28
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.77
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 2.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.1
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 7.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 9.4
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect(2) = 0.28
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 750 PPPPPPPXXXK 782
PPPPPPP K
Sbjct: 24 PPPPPPPGYVK 34
Score = 24.2 bits (50), Expect(2) = 0.28
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 735 PXXXLPPPPPPP 770
P PPPPPPP
Sbjct: 5 PPGNPPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +1
Query: 640 PPXPPXXFXXXPSXCPAPXXXHX----SPGVXKXXPXPXXSXPPPPPP 771
PP PP P+ P P P P + PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/60 (33%), Positives = 20/60 (33%)
Frame = +1
Query: 592 PPXPPXPKKXXXXFFXPPXPPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXSXPPPPPP 771
PP P P PP P P P PGV P P PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP------PGVAGAGPPP----PPPPPP 783
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +1
Query: 595 PXPPXPKKXXXXFFXPPXPPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXSXPPPPP 768
P PP P PP PP PS PAP S P S P PP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANS-----STPMNYVSQPESPP 781
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/59 (33%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Frame = +1
Query: 601 PPXPKKXXXXFFXPPXPPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXS--XPPPPPP 771
PP PK PP P PS PAP P P P S PP P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSI-PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +1
Query: 595 PXPPXPKKXXXXFFXPPXPPXXFXXXPSXCPAPXXXHXSP----GVXKXXPXPXXSXPPP 762
P PP P PP P+ P P +P G+ P P + PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 763 PPP 771
P P
Sbjct: 478 PAP 480
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = +1
Query: 592 PPXPPXPKKXXXXFFXPPXPPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXSXPPPPPP 771
PP PP P + PP S P P S P PPPPP
Sbjct: 311 PPPPPPPSRRNRG-----KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 747 LPPPPPPP 770
LPPPPPPP
Sbjct: 336 LPPPPPPP 343
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/62 (30%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 592 PPXPPXPKKXXXXFFXPPXPPXXFXXXPSXCP--APXXXHXSPGVXKXXPXPXXSXPPPP 765
PP PP P+ P PP P P AP P + S PP P
Sbjct: 337 PPPPPPPRSNAAGSI--PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSR---AVSNPPAP 391
Query: 766 PP 771
PP
Sbjct: 392 PP 393
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.2 bits (50), Expect(2) = 2.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 735 PXXXLPPPPPPP 770
P PPPPPPP
Sbjct: 1091 PSAVPPPPPPPP 1102
Score = 21.4 bits (43), Expect(2) = 2.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 750 PPPPPPPXXXK 782
PPPPPP K
Sbjct: 1097 PPPPPPAEVEK 1107
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/61 (26%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Frame = +1
Query: 592 PPXPPXPKKXXXXFFXPPX-PPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXSXPPPPP 768
PP P P P PP PS AP +P + P P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 769 P 771
P
Sbjct: 184 P 184
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 640 PPXPPXXFXXXPSXCPAPXXXHXSPGVXKXXPXPXXSXPPPPPP 771
PP PP PS P P +P P P S P P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP----PPPLPASSAPSVPNP 1746
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 82 ASPFSRLSS*FLKMLGAISRVGNRHFNPLNQLLRNPFQNVXKSLXXMPVN 231
+SPF+ S F + GA+S + R N +PF + SL VN
Sbjct: 296 SSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILDGVN 345
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = -1
Query: 198 ILKGISQQLI*RVKMPVSNSTYCPQHFQKSAAQSGKWASRKINYV 64
IL G ++++ + +P+ + + + Q+ +Q G+WA R+ Y+
Sbjct: 1382 ILTG-AREIATKTPLPIVDLKFRSRQLQRRRSQIGEWAEREYLYL 1425
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 747 LPPPPPPP 770
LPPPPPPP
Sbjct: 305 LPPPPPPP 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,129
Number of Sequences: 5004
Number of extensions: 40564
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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