Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D10
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.3  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   5.1  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 869  TGIRXQAXGVETGGXGAHRPSLGAERPT 786
            TGIR QA G+ T   G H  + G  +PT
Sbjct: 1152 TGIRAQATGIMTQPTGLHTQATGMMQPT 1179


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 537 LRPPDEHHKNRRSSQRWAKPRQDY 608
           L  PD H++  + S+ W K ++DY
Sbjct: 575 LEGPDSHYEPSKRSRHWLKVKKDY 598


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 627 PPGKAPLRAAPPGFRXLPA*PGIPVPALSSP 719
           PP  A + AAPP     PA P  P PA ++P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 627 PPGKA--PLRAAP-PGFRXLPA*PGIP 698
           PPG A  P   AP PG+  +PA PGIP
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIP 552


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 513 RCWPFFHRLRPPDEHHKNRRSSQRWAKPRQDYKDTR 620
           R W FF+R   P +         +W++P  D+ DT+
Sbjct: 322 RSW-FFNRSEIPSDITSGSPQPAKWSEPVADFPDTK 356


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 588  AKPRQDYKDTRRXPPGKAPLR-AAPPGFRXLPA*PGIPVPALSSPS 722
            A P Q    T   PP   P   +APP     P+ P  P+PA S+PS
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,382
Number of Sequences: 5004
Number of extensions: 61223
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)