Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D10
         (947 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    33   0.30 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   3.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   3.7  
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    29   6.4  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule abn...    28   8.5  
AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule abn...    28   8.5  
AF025450-1|AAB70937.1|  321|Caenorhabditis elegans Hypothetical ...    28   8.5  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    28   8.5  
AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.      28   8.5  

>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 528 FHRLRPPDEHHKNRRSSQRWAKPRQDYKDTRRXPPGKAPLRAAPPGFR 671
           F+ + PP+ H++ R  +Q ++    +Y+     P  +AP   A P FR
Sbjct: 7   FNPISPPNNHYRPRSPTQSYSSNATNYEQPWNSPRFRAPADPAEPKFR 54


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 567 RRSSQRWAKPRQDYKDTRRXPPGKAPLRAAPPGFRXLPA*PGIPVPALSSPS 722
           R+SS+  ++ R++ +  RR PP  +P   +PP  R     P    P    PS
Sbjct: 391 RKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPS 442


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 567 RRSSQRWAKPRQDYKDTRRXPPGKAPLRAAPPGFRXLPA*PGIPVPALSSPS 722
           R+SS+  ++ R++ +  RR PP  +P   +PP  R     P    P    PS
Sbjct: 412 RKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPS 463


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 567 RRSSQRWAKPRQDYKDTRRXPPGKAPLRAAPPGFRXLPA*PGIPVPALSSPS 722
           R+SS+  ++ R++ +  RR PP  +P   +PP  R     P    P    PS
Sbjct: 397 RKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPS 448


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 755 EVMEKGRQRFPGRGGKGGDRYSRLSGQGSETRRSGTEGS 639
           E  ++ RQ +P  GG     YS +S    + RRS T  S
Sbjct: 243 EHQQQNRQNYPMHGGSPSSNYSTISVDSVKRRRSTTVDS 281


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +2

Query: 686 TGNTCPRPFLPFREXVGXLSP*PPRPXKVSQXRV*VVPLPSWACVHXTPPFQPRXPA 856
           T  T P+P  P    +   SP  P+P +VS+      PLP  A     PP  P  PA
Sbjct: 458 TPPTTPKPAPPPPSRIPNPSP-SPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPA 513


>AF068708-5|AAK68200.1|  628|Caenorhabditis elegans P granule
           abnormality protein 3,isoform b protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 722 GRGGKGGDRYSRLSGQGSETRRSGTEG 642
           GRG  GGDR    SG GS   R G  G
Sbjct: 575 GRGAYGGDRGRGGSGDGSRGYRGGDRG 601


>AF068708-4|AAC17755.1|  693|Caenorhabditis elegans P granule
           abnormality protein 3,isoform a protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 722 GRGGKGGDRYSRLSGQGSETRRSGTEG 642
           GRG  GGDR    SG GS   R G  G
Sbjct: 640 GRGAYGGDRGRGGSGDGSRGYRGGDRG 666


>AF025450-1|AAB70937.1|  321|Caenorhabditis elegans Hypothetical
           protein C41H7.6 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 764 QXXEVMEKGRQRFPGRGGKGGDRYSRLSGQGSETRRSGTEGS 639
           Q  E  ++ +Q +P  GG     YS +S    + RRS T  S
Sbjct: 211 QVYENQQQNQQTYPMHGGSPSSDYSTISAHSLKRRRSTTVDS 252


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 627 PPGKAPLRAAPPGFRXLPA*PGIPVPAL 710
           PP   P   APPG    P  P +PVP L
Sbjct: 15  PPVGFPPVTAPPGLHPPPPVPPVPVPTL 42


>AB120729-1|BAC87886.1|  693|Caenorhabditis elegans PGL-3 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 722 GRGGKGGDRYSRLSGQGSETRRSGTEG 642
           GRG  GGDR    SG GS   R G  G
Sbjct: 640 GRGAYGGDRGRGGSGDGSRGYRGGDRG 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,083
Number of Sequences: 27780
Number of extensions: 390495
Number of successful extensions: 1165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)