Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D09
         (960 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.7  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   8.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   8.1  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 417 VXPXXXGGPKXGGXPP 370
           + P   GGP  GG PP
Sbjct: 60  IPPHHYGGPPSGGQPP 75


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 873 PXNTPPAAXPXRXP 914
           P NTPPA  P   P
Sbjct: 89  PQNTPPAGYPMDVP 102


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 873 PXNTPPAAXPXRXP 914
           P NTPPA  P   P
Sbjct: 89  PQNTPPAGYPMDVP 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,870
Number of Sequences: 336
Number of extensions: 979
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27099446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)