Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D06
         (929 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   1.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    24   1.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       23   4.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   5.9  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 269 ALFIFVVCGSAVFQIIQSIRLALNHEDHWEXXYSK 373
           ALFI  +C   VF   Q+   A   ED +E    K
Sbjct: 7   ALFILAICACTVFAQQQAEETAPKKEDSFEVELCK 41


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 236 SFSLVVLGTFPLIVMFLLAISLAIRILCLGGH 141
           S ++ +LGT+   +MF++A S+ + ++ L  H
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 236 SFSLVVLGTFPLIVMFLLAISLAIRILCLGGH 141
           S ++ +LGT+   +MF++A S+ + ++ L  H
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 236 SFSLVVLGTFPLIVMFLLAISLAIRILCLGGH 141
           S ++ +LGT+   +MF++A S+ + ++ L  H
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 239 SSFSLVVLGTFPLIVMFLLAISLAIRILCLGGH 141
           +S ++ ++GT+   +MF++A S+ + ++ L  H
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 239 SSFSLVVLGTFPLIVMFLLAISLAIRILCLGGH 141
           +S ++ ++GT+   +MF++A S+ + ++ L  H
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYH 299


>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 337 KSRRPLGEXLFENPIKXTTLSPLKV 411
           + R  LG+ LFE+ ++  ++ P+K+
Sbjct: 4   RQRTGLGKRLFEHMLQTESIEPVKM 28


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 768  PPXTXSSPPXXNXSKXPPGEXF 833
            PP + SS P    SK PP   F
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAGF 1133


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 289 HYEDEESKEPRVPQDIGLL---FPW 224
           H E+ E+ EP+ P+D  LL   F W
Sbjct: 225 HQENFENYEPKSPEDEELLDAIFSW 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,736
Number of Sequences: 336
Number of extensions: 3373
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)