Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D06
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   6.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   8.7  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   8.7  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 260 QGATGYWSSFSLVVLGTFPLIVMFLLA 180
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 313 YLEH-SRATHYEDEESKEP 260
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +1

Query: 115 TNILYNKTKWPPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWAPCSLHLRSVW 294
           T+ + N  + P     R++   +S N+  + ++PK   +     P+   +P SL     +
Sbjct: 88  TSTISNARQHPRNSVSRLSR--SSSNVRQQRDIPKQNFKVRPLSPLRGQSPASLRSEESF 145

Query: 295 LCCVPDNPINKT 330
                 N INKT
Sbjct: 146 TLKERQNAINKT 157


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 121  ILYNKTKWPPKQRMRIANEIASKNITMRGNVPK-TTKEKEDQYPV 252
            + YN   W  K+  +   EI S+      N PK T   K  + P+
Sbjct: 1053 LFYNNAAWTSKELYKRCEEIISQMSLDERNTPKHTASTKRKRQPI 1097


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,121
Number of Sequences: 5004
Number of extensions: 50200
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)