Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D06
         (929 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0519 - 19945456-19945653,19947110-19947112                       37   0.026
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    37   0.026
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    29   5.3  

>12_02_0519 - 19945456-19945653,19947110-19947112
          Length = 66

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 187 KNITMRGNVPKTTKEKEDQYPVAP 258
           KNIT RG+VP+TT +K + YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 36.7 bits (81), Expect = 0.026
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +1

Query: 187 KNITMRGNVPKTTKEKEDQYPVAP 258
           KNIT RG+VP+TT +K + YPV P
Sbjct: 17  KNITKRGSVPETTVKKGNDYPVGP 40


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 193 ITMRG-NVPKTTKEKEDQYPVAPWAPCSLHLRSVWLCCVPDNPINKTSLKSRRPLGEXLF 369
           IT  G N  K  +    +YP   W PC  H  ++ L  V   P ++  ++S R +   L+
Sbjct: 286 ITDNGSNYKKACRLLRQEYPTIVWQPCVAHTINLMLKEVGKMPDHEMVIESARKICRWLY 345

Query: 370 EN 375
            +
Sbjct: 346 NH 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,827,475
Number of Sequences: 37544
Number of extensions: 431228
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)