Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D05
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   0.11 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.6  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    26   8.2  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect(2) = 0.11
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 833 GIRGQRSGXNGGFGAHS 783
           G RG R G  GGFG +S
Sbjct: 142 GFRGGRGGSRGGFGGNS 158



 Score = 25.0 bits (52), Expect(2) = 0.11
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 677 GKRAGFG--NRESARGSFQGGN 618
           G R GFG  +R  +RG F+GG+
Sbjct: 165 GSRGGFGGGSRGGSRGGFRGGS 186


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 596 QDYKDTRRFPPGSSLVRSPCFRTLPAYRIPVPPF 697
           QDY   RRF   SS   +  F + PA+     PF
Sbjct: 219 QDYNQGRRFGNASSTNTTSAFGSTPAFGASTTPF 252


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 697 ERRNRYPVSGQGSETGRAHEGASR 626
           +R  R P SG G  +GR H+G+ +
Sbjct: 15  KRVGRGPASGLGKTSGRGHKGSGQ 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,235
Number of Sequences: 5004
Number of extensions: 63262
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)