Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D05
         (884 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14268-1|AAA60694.1|  130|Homo sapiens T-cell receptor beta chai...    32   3.2  
AK092134-1|BAC03813.1|  154|Homo sapiens protein ( Homo sapiens ...    32   3.2  
AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>M14268-1|AAA60694.1|  130|Homo sapiens T-cell receptor beta chain
           precursor protein.
          Length = 130

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = -2

Query: 700 GERRNRYPVSGQGSETGRAHEG--ASRGETPGIFIVLSGFATSDLSVDFCDARQGGGAYG 527
           G R   Y    + ++ G   +G   SR +T    + L    +S  SV FC    G G + 
Sbjct: 56  GLRLIHYSYGVKDTDKGEVSDGYSVSRSKTEDFLLTLESATSSQTSVYFCAISGGPGGHW 115

Query: 526 KTPATR-PFYGSW 491
           + P+T     GSW
Sbjct: 116 ERPSTSGQARGSW 128


>AK092134-1|BAC03813.1|  154|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34815 fis, clone NT2NE2007786. ).
          Length = 154

 Score = 31.9 bits (69), Expect = 3.2
 Identities = 28/83 (33%), Positives = 35/83 (42%)
 Frame = +2

Query: 416 GGNTVIHRIRGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETR 595
           GG  +  R+          ++     G V  PR  R S  SAP  S     A V GG  R
Sbjct: 31  GGIRLAERVNRRADRNVLRREKGLALGRVTFPRAGRGSRVSAPARSEPG-PAAVPGGVRR 89

Query: 596 QDYKDTRRFPPGSSLVRSPCFRT 664
            D    R+FPPG+S    P FR+
Sbjct: 90  AD---DRKFPPGAS---QPAFRS 106


>AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35392 fis, clone SKNSH2000716. ).
          Length = 149

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 20/39 (51%), Positives = 20/39 (51%)
 Frame = -2

Query: 550 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 434
           RQ  G  G   A R F  S P  GLL  CS LR  PDSV
Sbjct: 69  RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,021,946
Number of Sequences: 237096
Number of extensions: 2773924
Number of successful extensions: 8472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8465
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)