Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D05
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical p... 29 3.3
Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical p... 29 3.3
Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical p... 29 3.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.3
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical
protein C36B1.12c protein.
Length = 662
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical
protein C36B1.12b protein.
Length = 640
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical
protein C36B1.12a protein.
Length = 652
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 701 GRKAEQVS-GKRAGFGNRESARGSFQGGNAWYLYSP 597
G++ EQ G ++GFGN + ++G F G + SP
Sbjct: 24 GQQQEQSGFGSQSGFGNNQGSQGGFGGNQGGFSGSP 59
Score = 24.6 bits (51), Expect(2) = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 833 GIRGQRSGXNGGFGAH 786
G GQ +G NGGFG +
Sbjct: 185 GQNGQNTGNNGGFGGN 200
Score = 23.0 bits (47), Expect(2) = 4.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 704 EGRKAEQVSGKRAGFGNRESARGSFQG 624
+G A G++ GFG ++ + F+G
Sbjct: 201 QGVTASGFGGQQQGFGQQQQTQNGFRG 227
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 701 GRKAEQVS-GKRAGFGNRESARGSFQGGNAWYLYSP 597
G++ EQ G ++GFGN + ++G F G + SP
Sbjct: 45 GQQQEQSGFGSQSGFGNNQGSQGGFGGNQGGFSGSP 80
Score = 24.6 bits (51), Expect(2) = 3.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 833 GIRGQRSGXNGGFGAH 786
G GQ +G NGGFG +
Sbjct: 206 GQNGQNTGNNGGFGGN 221
Score = 23.0 bits (47), Expect(2) = 3.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 704 EGRKAEQVSGKRAGFGNRESARGSFQG 624
+G A G++ GFG ++ + F+G
Sbjct: 222 QGVTASGFGGQQQGFGQQQQTQNGFRG 248
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 701 GRKAEQVS-GKRAGFGNRESARGSFQGGNAWYLYSP 597
G++ EQ G ++GFGN + ++G F G + SP
Sbjct: 30 GQQQEQSGFGSQSGFGNNQGSQGGFGGNQGGFSGSP 65
Score = 24.6 bits (51), Expect(2) = 3.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 833 GIRGQRSGXNGGFGAH 786
G GQ +G NGGFG +
Sbjct: 191 GQNGQNTGNNGGFGGN 206
Score = 23.0 bits (47), Expect(2) = 3.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -1
Query: 704 EGRKAEQVSGKRAGFGNRESARGSFQG 624
+G A G++ GFG ++ + F+G
Sbjct: 207 QGVTASGFGGQQQGFGQQQQTQNGFRG 233
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 416 GGNTVIHRIRGITQERTCEQKASKRPGTVK 505
GG +V +R + Q+++ ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,456
Number of Sequences: 27780
Number of extensions: 384435
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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