Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D04
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.6  
AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical ...    30   2.7  
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    29   6.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -3

Query: 293 PXPPXFXFXGXXXPPXPPXGXGLPPXXYHVPAPG*P 186
           P PP   + G   PP PP      P  Y  P P  P
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -3

Query: 293 PXPPXFXFXGXXXPPXPPXGXGLPPXXYHVPAPG*P 186
           P PP   + G   PP PP      P  Y  P P  P
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 381


>AF067219-3|AAC17027.1|   74|Caenorhabditis elegans Hypothetical
           protein R12E2.6 protein.
          Length = 74

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 293 PXPPXFXFXGXXXPPXPPXGXGLP 222
           P PP F   G   PP PP G  LP
Sbjct: 49  PPPPPFGPVGYALPPPPPNGYALP 72


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = -3

Query: 293 PXPPXFXFXGXXXPPXPPXGXGLPPXXYHVPAPG*PSIXG 174
           P PP     G   PP PP   G P   Y V  PG P   G
Sbjct: 255 PGPP-----GPAGPPGPPGNNGAPGGGYGVGPPGPPGPSG 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,726,407
Number of Sequences: 27780
Number of extensions: 125544
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)