Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D03
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...   196   3e-51
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...   195   6e-51
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...   186   3e-48
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   8.0  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   8.0  

>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score =  196 bits (479), Expect = 3e-51
 Identities = 96/187 (51%), Positives = 119/187 (63%), Gaps = 1/187 (0%)
 Frame = +1

Query: 85  KAIVIDGRGHLLGRLAAVIAXXXXXXXXXXXXRCEQINISGNFFRNKLKLMSFLRKRCNV 264
           K +VID +GHLLGRLA+V+A            RCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 265 NPAXGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 444
           NP+ G FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 445 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGXAVKXVA-YEKKLKXITKDAGE 621
               LKPGR YC VGRLS E+GWKY D+V KLE++RK   VK  A Y+ KL    K A  
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRK---VKSAAFYQAKLAKQKKIASA 182

Query: 622 XVSKAXN 642
             + + N
Sbjct: 183 KAASSVN 189


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  195 bits (476), Expect = 6e-51
 Identities = 96/187 (51%), Positives = 118/187 (63%), Gaps = 1/187 (0%)
 Frame = +1

Query: 85  KAIVIDGRGHLLGRLAAVIAXXXXXXXXXXXXRCEQINISGNFFRNKLKLMSFLRKRCNV 264
           K +VID +GHLLGRLA+V+A            RCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 265 NPAXGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 444
           NP+ G FHFRAPS+I  K VRGM+PHKT RG+ AL  L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125

Query: 445 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGXAVKXVA-YEKKLKXITKDAGE 621
               LKPGR YC VGRLS E+GWKY D+V KLE++RK   VK  A Y+ KL    K A  
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRK---VKSAAFYQAKLAKQKKIASA 182

Query: 622 XVSKAXN 642
             +   N
Sbjct: 183 KEASPVN 189


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score =  186 bits (454), Expect = 3e-48
 Identities = 81/157 (51%), Positives = 106/157 (67%)
 Frame = +1

Query: 85  KAIVIDGRGHLLGRLAAVIAXXXXXXXXXXXXRCEQINISGNFFRNKLKLMSFLRKRCNV 264
           K ++ID +GHL+GRLA+ +A            RCE++NISG+FFRNKLK +++LRK C  
Sbjct: 6   KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65

Query: 265 NPAXGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 444
           NP+ G FHFRAPS+I  K VRGM+PHKT RG  AL+ L+  +G PPPFD           
Sbjct: 66  NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125

Query: 445 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRK 555
               LKP R YC +GRLS E+GWKY+++V KLE++RK
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRK 162


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
 Frame = +3

Query: 711 LLXCPXXPPP------PXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
           LL  P  PPP      P           P    P  P  PP   G   PPPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPPS 851
           P PP  P        P    P  P  PP   G    PP S
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNS 270


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 377 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 291
           S L AFLP+  LC +IPL    + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 398 GHPSYVRSLLRAFLPRSVLCGIIP 327
           G+ SY+ + L+AFLP++V   + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 195 DLFAANHNNFVPXEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 58
           D+ A N       +  L    RQ  QQM T   +YGL+ KAR   N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,128,061
Number of Sequences: 5004
Number of extensions: 58172
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)