Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D03
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 201 6e-52
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 201 6e-52
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.46
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.46
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 32 0.61
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.81
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 31 1.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 1.1
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 1.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 31 1.1
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.9
U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 4.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 4.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.7
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 29 5.7
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 5.7
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 5.7
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 5.7
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 7.5
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 7.5
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 7.5
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 7.5
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 7.5
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 7.5
J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein. 28 7.5
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 28 7.5
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 7.5
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 7.5
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 28 10.0
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 28 10.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 10.0
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 28 10.0
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 201 bits (490), Expect = 6e-52
Identities = 100/199 (50%), Positives = 127/199 (63%)
Frame = +1
Query: 73 GFSNKAIVIDGRGHLLGRLAAVIAXXXXXXXXXXXXRCEQINISGNFFRNKLKLMSFLRK 252
G SN+AI+IDG+ HLLGRLA+++A R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 253 RCNVNPAXGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 432
RCN+NPA G FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 433 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGXAVKXVAYEKKLKXITKD 612
F L+P R +C VGRLSHE+GW+++DVV KLE KRK VK AY ++ K + K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRK---VKGAAYFEQKKKMDKL 177
Query: 613 AGEXVSKAXNTIHYHHPIL 669
A + A I + I+
Sbjct: 178 AVQAKKNAAPKIAQYQKII 196
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 201 bits (490), Expect = 6e-52
Identities = 100/199 (50%), Positives = 127/199 (63%)
Frame = +1
Query: 73 GFSNKAIVIDGRGHLLGRLAAVIAXXXXXXXXXXXXRCEQINISGNFFRNKLKLMSFLRK 252
G SN+AI+IDG+ HLLGRLA+++A R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 253 RCNVNPAXGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 432
RCN+NPA G FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 433 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGXAVKXVAYEKKLKXITKD 612
F L+P R +C VGRLSHE+GW+++DVV KLE KRK VK AY ++ K + K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRK---VKGAAYFEQKKKMDKL 177
Query: 613 AGEXVSKAXNTIHYHHPIL 669
A + A I + I+
Sbjct: 178 AVQAKKNAAPKIAQYQKII 196
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 723 PXXPPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPPS 851
P PPPP P PG PG P G PPPPS
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMP----GMPPPPPPS 323
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 723 PXXPPPPXXPXXXXXXXXPXXXXPG-APGXPPXXXGXXWPPPP 848
P PPP P P PG P PP WPPPP
Sbjct: 261 PPVPPP---PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 300
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P P P PP G PPPP
Sbjct: 350 PPPPRYPSAGPGMYPPPP--PSRPPAPPSGHGMIPPPPP 386
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 718 LAPXXXPPXXXPXPPXPXXXPXXXFPGPPGXP 813
+ P PP P P P PGPPG P
Sbjct: 283 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 314
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +3
Query: 723 PXXPPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPPS 851
P PPPP P PG PG P G PPPPS
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMP----GMPPPPPPS 333
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 723 PXXPPPPXXPXXXXXXXXPXXXXPG-APGXPPXXXGXXWPPPP 848
P PPP P P PG P PP WPPPP
Sbjct: 271 PPVPPP---PPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPP 310
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P P P PP G PPPP
Sbjct: 360 PPPPRYPSAGPGMYPPPP--PSRPPAPPSGHGMIPPPPP 396
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 718 LAPXXXPPXXXPXPPXPXXXPXXXFPGPPGXP 813
+ P PP P P P PGPPG P
Sbjct: 293 MTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMP 324
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P P G PP PPPP
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 709 PFXLAPXXXP-PXXXPXPPXPXXXPXXXFPGPPGXP 813
P + P P P P PP P P PGPPG P
Sbjct: 229 PGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPP 264
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 724 PXXXPPXXXPXPPXPXXXPXXXFPGPPGXP 813
P P PP P P PGPPG P
Sbjct: 246 PPGPPGPPTRRPPGPPGPPTRRPPGPPGPP 275
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGGPGXXXXGXXXGXGGXGXXXGGXXXGAXQKG 708
G G WGGP RG PG G G G GG G G Q G
Sbjct: 224 GGGGGWGGP----AQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGG 270
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGGPGXXXXGXXXGXGGXGXXXG-GXXXGAXQKG 708
G G WGGP RG PG G G G GG G G G Q G
Sbjct: 186 GGGGGWGGP----AQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 233
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = -2
Query: 847 GGGGXXXPXXKGGX-----PGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG P +GG PG G G G GGGG G
Sbjct: 187 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 233
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGGPGXXXXGXXXGXGGXGXXXGGXXXGAXQKG 708
G G WGGP RG PG G G G GG G G Q G
Sbjct: 186 GGGGGWGGP----AQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGG 232
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGGPGXXXXGXXXGXGGXGXXXG-GXXXGAXQKG 708
G G WGGP RG PG G G G GG G G G Q G
Sbjct: 224 GGGGGWGGP----AQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 271
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Frame = -2
Query: 847 GGGGXXXPXXKGGX-----PGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG P +GG PG G G G GGGG G
Sbjct: 225 GGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGG 271
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGGPGXXXXGXXXGXGGXGXXXGGXXXGAXQKG 708
G G WGGP RG PG G G G GG G G Q G
Sbjct: 224 GGGGGWGGP----AQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGG 270
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P G PP G PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P G PP G PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P G PP G PPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
>U40797-6|AAB37547.1| 235|Caenorhabditis elegans Hypothetical
protein C28C12.4 protein.
Length = 235
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGXPGG-PGXXXXGXXXGXGGXGXXXGGXXXGAXQKGL 705
G GR GGP P R PGG G G G G G GG G GL
Sbjct: 164 GPGGRHGGPGGPGGRRMGPGGRGGDSREGPMMGGMGRG-GFGGQGMGGMGAGL 215
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -2
Query: 526 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 359
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -2
Query: 538 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 365
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 364 HSCHA 350
H HA
Sbjct: 595 HGHHA 599
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
PPPP P P P P PP G PPPP
Sbjct: 561 PPPPPPPLPQNLSGAP----PPPPPPPPMLGGPPPPPPP 595
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPPS 851
PPPP P P G P PP PPPPS
Sbjct: 84 PPPP--PMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPS 121
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/74 (32%), Positives = 25/74 (33%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQXKRXYFGYNXXVVIVSI 668
G G P G PGAPG G G GG G GQ G N I
Sbjct: 230 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQPGAN--GDNG--ADGEI 283
Query: 667 GLDDGSEWCXSPXT 626
G G + C P T
Sbjct: 284 GAPGGCDHCPPPRT 297
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGG 731
GGGG +GG G G G G GGGG
Sbjct: 234 GGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGGG 272
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +3
Query: 732 PPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPPS 851
PPPP P P PG G PP + PPP+
Sbjct: 411 PPPPGGP-GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT 449
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG G G PG G G GGGG G
Sbjct: 132 GGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGG 173
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG GG G G G G GGGG G
Sbjct: 66 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGG 107
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG GG G G G G GGGG G
Sbjct: 136 GGGGGCGGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGG 177
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
G G P K G PGAPG G G G GG G
Sbjct: 1208 GDNGLSGPPGKAGYPGAPG--TDGYPGPPGLSGMPGHGGDQG 1247
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
G G P K G PGAPG G G G GG G
Sbjct: 1465 GDNGLSGPPGKAGYPGAPG--TDGYPGPPGLSGMPGHGGDQG 1504
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG GG G G G G GGGG G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCG 125
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG GG G G G G GGGG G
Sbjct: 84 GGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCG 125
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
G G P K G PGAPG G G G GG G
Sbjct: 1464 GDNGLSGPPGKAGYPGAPG--TDGYPGPPGLSGMPGHGGDQG 1503
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQ 719
G G P G PGAPG G G GG G GQ
Sbjct: 230 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQ 270
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQ 719
G G P G PGAPG G G GG G GQ
Sbjct: 292 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQ 332
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQ 719
G G P G PGAPG G G GG G GQ
Sbjct: 229 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQ 269
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQ 719
G G P G PGAPG G G GG G GQ
Sbjct: 229 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQ 269
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXGQ 719
G G P G PGAPG G G GG G GQ
Sbjct: 230 GAPGPDGPAGPAGSPGAPG--NPGSQGPQGPAGDNGGAGSPGQ 270
>J05067-1|AAB59179.1| 313|Caenorhabditis elegans clb-2 protein.
Length = 313
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
G G P K G PGAPG G G G GG G
Sbjct: 19 GDNGLSGPPGKAGYPGAPG--TDGYPGPPGLSGMPGHGGDQG 58
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -2
Query: 865 RXVFXEGGGGXXXPXXKGGXPGAPGXXXXG-XXXXXXXXGXXGGGGXXGQXKRXYFG 698
R F GGGG +GG G G G G GG G KR Y G
Sbjct: 174 RGGFGRGGGGGFRGGDRGGFGGGRGGFRGGDRGGFRGGRGGDFGGRGRGDFKRSYDG 230
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = -1
Query: 860 GFXGRWGGPXXPXXXRGX--PGGPG-XXXXGXXXGXGGXGXXXGGXXXG 723
G G GGP P G PGGPG G G GG G G G
Sbjct: 95 GGLGTPGGPGNPGGPGGLGTPGGPGTPGGPGNPGGLGGPGNPGGPGTPG 143
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 847 GGGGXXXPXXKGGXPGAPGXXXXGXXXXXXXXGXXGGGGXXG 722
GGGG GG G G G G GGGG G
Sbjct: 166 GGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGG 207
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 736 PPXXXPXPPXPXXXPXXXFPGPP 804
PP P PP P +PGPP
Sbjct: 1280 PPLQPPPPPQMTGPPIGIYPGPP 1302
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 472 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGXAVK-XVAYEKKLKXITKDAGEXV 627
+YC G+ S H I WKYRD V ++ K K A++ A E K I D + V
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 723 PXXPPPPXXPXXXXXXXXPXXXXPGAPGXPPXXXGXXWPPPP 848
P PPPP P P P P PPPP
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPP 1380
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +1
Query: 736 PPXXXPXPPXPXXXPXXXFPGPP 804
PP P PP P +PGPP
Sbjct: 1280 PPLQPPPPPQMTGPPIGIYPGPP 1302
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,940
Number of Sequences: 27780
Number of extensions: 396804
Number of successful extensions: 2592
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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