Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_D01
(1072 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 40 5e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.010
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.039
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.16
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.16
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.28
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.64
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.64
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.84
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.84
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.84
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.7
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 4.5
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 23 4.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.9
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 5.9
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 26 7.8
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 40.3 bits (90), Expect = 5e-04
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXXPPPPPP 518
PPP PPP PP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +3
Query: 459 PPGXPPPXXXPPXXPPP--PPPXPXXG 533
PPG PPP PP PP PPP P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 32.7 bits (71), Expect = 0.090
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPP 512
P PPPG PP PP PPPP
Sbjct: 12 PPPPPGFEPPSQPPP--PPPP 30
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXXPP--PPPPXP 524
PP PPP P PP PPPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 31.1 bits (67), Expect = 0.28
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPPP 513
P PPP P P P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 30.3 bits (65), Expect = 0.48
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPPP 513
P PPP P P PP PPPP
Sbjct: 12 PPPPPGFEP--PSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.84
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 92 PPPXLPPPPXXLPXXASPXXXPPPG 166
PPP PPPP + P PPPG
Sbjct: 9 PPP--PPPPPGFEPPSQPPPPPPPG 31
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 95 PPXLPPPPXXLPXXASPXXXPPP 163
PP PPPP P P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPP 27
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPPP 513
P PP PP PP PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPP 26
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.010
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXXPPPPPPXP 524
PPP PPP PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 34.7 bits (76), Expect = 0.022
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Frame = +3
Query: 450 PXPPP----GXPPPXXXPP----XXPPPPPPXP 524
P PPP G PPP PP PPPPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 34.7 bits (76), Expect = 0.022
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPPXPXXGG 536
P PPP P P PPPPPP GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.5 bits (68), Expect = 0.21
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPPXPXXGG 536
P P P PP PPPPPP P G
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 91 PPPPPPPPP 117
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 438 LXXXPXPPPGXPPPXXXPPXXPPPPPPXPXXGG 536
L P PPP P P P PPP P GG
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPA-PIMGG 760
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPPXPXXGG 536
P P P PP PPPPPP G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 74 PFFXXXPPPXLPPPPXXLPXXASPXXXPPPGXS 172
P PPP PPPP P PPP S
Sbjct: 756 PIMGGPPPP--PPPPGVAGAGPPPPPPPPPAVS 786
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.039
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 457 PPPAXPPLXPXPPPXPPPP 513
PPP+ PP+ PP PPPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPP 1734
Score = 33.5 bits (73), Expect = 0.052
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXXPPPPPP 518
PPP PP PP PPPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736
Score = 31.9 bits (69), Expect = 0.16
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 450 PXPPPGXPPPXXXP--PXXPP--PPPPXP 524
P PP PPP P P PP PPPP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 31.9 bits (69), Expect = 0.16
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 92 PPPXLPPPPXXLPXXASPXXXPPP 163
PP +PPPP P A P PPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPP 510
P PPP PP+ PPP PP
Sbjct: 1705 PTPPP--PPMSVPPPPSAPP 1722
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPPXP 524
P PPP PP PP PP P P
Sbjct: 1705 PTPPP--PPMSVPPPPSAPPMPAGP 1727
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPP---PPXP 524
P P PP P PPPP PP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPPXP 524
P PPP PPP PP PP P
Sbjct: 251 PAPPP-IPPPSNGTVSSPPNSPPRP 274
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPPP 513
P PA PPL P P PP P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAP 480
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +3
Query: 450 PXPP--PGXPPPXXXPPXXPPPPPPXP 524
P PP P PP P P PPP P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIP 257
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPP 510
P PP PP P PPP P P
Sbjct: 464 PAAPPL-PPAAPAPPPAPAP 482
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXP-PPPPPXP 524
P P G P PP P PPP P P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 451 PXPPPAXPPLXPXPPPXPPPP 513
P PA PPL P P PP P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLP 460
Score = 23.8 bits (49), Expect(3) = 0.16
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 91 PPPPPPP 111
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 5.8
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 91 PPPPPPP 111
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 23.8 bits (49), Expect(3) = 0.16
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 94 PPPPPPP 114
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 5.8
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 97 PPPPPP 114
PPPPPP
Sbjct: 361 PPPPPP 366
Score = 21.0 bits (42), Expect(3) = 0.16
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 100 PPPPPP 117
PPPPPP
Sbjct: 361 PPPPPP 366
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 523 GXGGGGGGXXGGXXXGGGXPGGGXG 449
G GGG GG GG GG PGG G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGG 249
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 523 GXGGGGGGXXGGXXXGGGXPGGGXG 449
G GGG GG GG GG PGG G
Sbjct: 239 GFGGGPGGFGGGLGGFGGGPGGFGG 263
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 523 GXGGGGGGXXGGXXXGGGXPGGGXG 449
G GGG GG GG GG PGG G
Sbjct: 246 GFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 518 RXGGGGXGGGXGXRGGXAGGGXG 450
R G GG GG G RGG +GG G
Sbjct: 44 RGGRGGRGGARGGRGGSSGGRGG 66
Score = 29.9 bits (64), Expect = 0.64
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -1
Query: 235 KGAXXGXEGGCVXPXXXCCXGRXXGGRGXXGGRGXGXXXXGGGEXGGG 92
+G G GG G G RG GGRG GG G G
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 506 GGXGGGXGXRGGXAGGGXG 450
GG GG G RGG GGG G
Sbjct: 23 GGRGGFGGGRGGARGGGRG 41
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 518 RXGGGGXGGGXGXRGGXAGGGXG 450
R G GG GG G GG GG G
Sbjct: 15 RGGRGGFNGGRGGFGGGRGGARG 37
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -3
Query: 509 GGGXGGGXGXRGGXAG--GGXG 450
GGG GG G RGG G GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRG 58
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 512 GGGGXGGGXGX-RGGXAGGGXG 450
G GG GGG G RGG GG G
Sbjct: 24 GRGGFGGGRGGARGGGRGGARG 45
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -1
Query: 523 GXGGGGGGXXGGXXXGGGXPGGGXG 449
G GG GG GG G G GG G
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARG 55
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 535 PPXXGXGGGGGGXXGGXXXGGGXPGGGXG 449
P G GG G GG G G GGG G
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRG 33
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -1
Query: 175 GRXXGGRGXXGGRGXGXXXXGGGEXGGGXXXEKG 74
G GGRG G G GG GGG +G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45
Score = 26.6 bits (56), Expect = 5.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 175 GRXXGGRGXXGGRGXGXXXXGGGEXGGGXXXEKGS 71
G GGRG G G G G G GG GS
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGS 60
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.64
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 175 GRXXGGRGXXGGRG--XGXXXXGGGEXGGGXXXEKGSP 68
G GGRG GGRG G GGG G G+P
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 512 GGGGXGGGXGXRGGXAGG 459
GG G GG G RGG GG
Sbjct: 454 GGFGGRGGFGGRGGFGGG 471
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.64
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPP 518
P PPP PP P PP PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPP 515
P PPP PP P PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 91 PPPPPPPPP 117
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 91 PPPPPPPPP 117
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPPP 518
P PP P P PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPP 243
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXX-------PPPPPPXP 524
PPP PP P PPPPPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 91 PPPPPPPPP 117
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 23.4 bits (48), Expect(2) = 8.9
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPP 494
P P P PPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 20.6 bits (41), Expect(2) = 8.9
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +3
Query: 471 PPPXXXPPXXPPPP 512
PPP P P PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.84
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 91 PPPPPPPPP 117
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 70 GTLFXXXPPPPPPPP 114
G + PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPPP 953
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 456 PPPGXPPPXXXPPXXPPPPPPXP 524
PP PP PP P PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIP 161
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 450 PXPPPGXPPPXXXPPXXPPPPP 515
P PPP PPP P P PP
Sbjct: 3 PAPPP--PPPAPAPAAAAPAPP 22
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 91 PPPPPPPP 114
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 94 PPPPPPPP 117
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -3
Query: 512 GGGGXGG-GXGXRGGXAGGGXG 450
GGG GG G G RGG GG G
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRG 184
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -3
Query: 512 GGGGXGG-GXGXRGGXAGGGXG 450
GG GG G G RGG GG G
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRG 176
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 517 GGGGGGXXGGXXXGGGXPGGGXG 449
GG GGG GG GGG GG G
Sbjct: 160 GGFGGGSRGGF--GGGSRGGSRG 180
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 23.0 bits (47), Expect(2) = 4.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 94 PPPPPPPP 117
PPPPPP P
Sbjct: 240 PPPPPPRP 247
Score = 22.2 bits (45), Expect(2) = 4.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 76 LFXXXPPPPPPPP 114
+F PPPPPP
Sbjct: 233 IFSSSSTPPPPPP 245
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 91 PPPPPPPP 114
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 94 PPPPPPPP 117
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 91 PPPPPPPP 114
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 94 PPPPPPPP 117
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 512 GGGGXGGGXGXRGG 471
GGGG GGG G GG
Sbjct: 135 GGGGMGGGMGGMGG 148
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 460 PPAXPPLXPXPPPXPPPP 513
P PP P PPP PP P
Sbjct: 802 PFKAPPPAPLPPPAPPLP 819
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 508 GGGXXGGXXXGGGXPGG 458
GG GG GGG PGG
Sbjct: 438 GGSFPGGGFPGGGFPGG 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,365
Number of Sequences: 5004
Number of extensions: 23799
Number of successful extensions: 728
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 561795324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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