Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_D01
         (1072 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.29 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 73   TLFXXXPPPPPPPPP 117
            T +    PPPPPPPP
Sbjct: 1348 TAWRQQQPPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 501  PPPPPPXPXXG 533
            PPPPPP P  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 490  PPPXPPPP 513
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 504  PPPPPXPXXGG 536
            PPPPP P   G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 492 PXXPPPPPPXPXXGG 536
           P  P PPPP P   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 489 PPXXPPPPPPXPXXG 533
           PP   PPPPP    G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 91  PPPPPPPP 114
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 94  PPPPPPPP 117
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 802 PPXXCPPPPP 831
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 91  PPPPPPPPP 117
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 91  PPPPPPPPP 117
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 484 PXPPPXPPPP 513
           P P P PPPP
Sbjct: 339 PKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 456 PPPGXPPPXXXPPXXPPPPPP 518
           P P   PP   PP  PP   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 91   PPPPPPPP 114
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 94   PPPPPPPP 117
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,305
Number of Sequences: 438
Number of extensions: 5300
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35788797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)