Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C24
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    30   2.2  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    29   3.9  
09_06_0081 + 20745627-20748144,20748211-20748308                       29   6.8  
11_06_0198 - 21158350-21159528                                         28   9.0  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   9.0  
05_03_0618 - 16262826-16263097,16263111-16263183                       28   9.0  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    28   9.0  

>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 717 SXSXPXPPXPXPPRGSXPLAXTHIGRPQXXTP---*XPLGAPXAQKFP 851
           S S P PP   PP    P+A   +  PQ  +P     P+ +P  +K P
Sbjct: 228 SPSRPEPPVASPPGPEPPVASPPVPEPQVASPPVLEPPVASPQTEKDP 275


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +2

Query: 749 PPTWFLXPCXHXYWPAPXXNPLXPLGGPXGXKVSPVXSPXFXXXLPPXPXPSP 907
           PP     P  H   P P   PL P   P    +SP  +P       P P P+P
Sbjct: 75  PPPAPRPPRRHHRIPPPPP-PLLPTPPPPPASISPTPAPPLPPPPAPAPPPTP 126


>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 729 PXPPXPXPPRGSXPLAXTHIGRPQXXTP*XPLGAPXAQKFP 851
           P PP P PP  + P++      P   TP  P+ AP A   P
Sbjct: 507 PAPPVPTPPAPAPPVSTLPSPAPSVHTP--PVTAPPATAPP 545


>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 190 ECRXW*IRDRYRQML*ISEGKEGRGYQGSREASDRKRXEEHH 315
           +CR W  R +  +   + E +E   Y G RE   RKR + HH
Sbjct: 275 DCRQW--RRQEEEEAAVDE-EEDHNYGGEREQHCRKRCQHHH 313


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 749 PPTWFLXPCXHXYWPAPXXNPLXPLGGPXGXKVSPVXSPXFXXXLPPXPXPSP 907
           PP ++  P      P P   PL P+  P   +V+P          PP   PSP
Sbjct: 407 PPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAPYPSPPEIVPSP 459


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 160 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 74
           S  C+CG+RS+R    +E +  +  LG V
Sbjct: 24  SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 10/86 (11%)
 Frame = -2

Query: 328 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSGLVFTXDDTHIQLLR----QXVI 161
           V E  G+P+AV D  +    D +  +FL+        G   +   +   L R      +I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 160 SSW------CKCGVRSQRTHGEDEGK 101
             W      C+  V S R HG  +G+
Sbjct: 765 RLWKKAATPCRAPVSSPRAHGHHQGQ 790


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,522
Number of Sequences: 37544
Number of extensions: 339157
Number of successful extensions: 1257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)