Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C24
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    30   2.0  
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    29   4.6  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    29   4.6  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.6  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.6  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.6  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 182 LYMSVVXGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 295
           LYM    G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 907 RAXXGGGR*RGXKXWGXNRGNFXAXGAPKGXQGVXXWGR 791
           R   GGG   G    G  RG F   G+P+G +G    GR
Sbjct: 67  RGGRGGGDRGGFGGRGSPRGGFGGRGSPRGGRGSPRGGR 105


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 827 GPXGXKVSPVXSPXFXXXLPPXPXPSP 907
           GP   K+SP+  P      PP P P P
Sbjct: 288 GPSSMKMSPIPPPPIKEESPPPPPPPP 314


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 827 GPXGXKVSPVXSPXFXXXLPPXPXPSP 907
           GP   K+SP+  P      PP P P P
Sbjct: 288 GPSSMKMSPIPPPPIKEESPPPPPPPP 314


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 268 DNLSLLFLQIFRAFGDSGLVFTXDDTHIQLLRQXVISSWCKCGVRSQRTHGEDEG 104
           DN + +  Q FR+ G S +     +  +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 717 SXSXPXPPXPXPPRGSXPLAXTHIGRPQXXTP*XPLGAP 833
           S   P  P   PP GS P      GRP   +P  P G+P
Sbjct: 400 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSP--PTGSP 436


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 717 SXSXPXPPXPXPPRGSXPLAXTHIGRPQXXTP*XPLGAP 833
           S   P  P   PP GS P      GRP   +P  P G+P
Sbjct: 421 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSP--PTGSP 457


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 717 SXSXPXPPXPXPPRGSXPLAXTHIGRPQXXTP*XPLGAP 833
           S   P  P   PP GS P      GRP   +P  P G+P
Sbjct: 406 SREEPRGPRRSPPTGSPPTGSPPTGRPPRGSP--PTGSP 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,064
Number of Sequences: 27780
Number of extensions: 244544
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)