Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C23
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    31   1.6  
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301...    29   6.5  
03_02_0271 + 7029410-7029949,7030054-7030566                           29   6.5  

>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +2

Query: 296 RHETHERRAQQEDFKHQTLDGLLINKQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLXD 472
           R ET  + AQ   F  +    ++I KQ       L+ C   G RY GY    R +A    
Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262

Query: 473 RWNIQGVFYSHK 508
           R +  G+F  H+
Sbjct: 263 R-DTAGIFRVHQ 273


>07_03_0968 -
           23027940-23028149,23028800-23029002,23029610-23030138,
           23030342-23030579,23031121-23031168,23031199-23031494
          Length = 507

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -2

Query: 143 YVWHLVLILNTRNHNGKRRVDSVTLNFVGQNVPNLKEFPIVSSV 12
           + ++ V++L +   NG+RR  SV +NF+     NL    +V+S+
Sbjct: 326 FAYYGVILLTSELSNGQRRCASVGINFMQPKDANLYRDVLVTSL 369


>03_02_0271 + 7029410-7029949,7030054-7030566
          Length = 350

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 272 SVRAFEKDRHETHERRAQQEDFKH-QTLDGLLINKQLWLAEGLLSCQTKG 418
           SV    K R E  E RA +E+           + ++LW   GLL+ QT G
Sbjct: 201 SVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQTLG 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,948
Number of Sequences: 37544
Number of extensions: 389943
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)