Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C21
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       33   0.003
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    30   0.033
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.11 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.31 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.2  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = +1

Query: 628 PHPPPXPXPXPPPPXPXXPPPPP--PPPXXXPPXPPPPXP 741
           P P P P   P  P    PP P   PPP   P  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 31.1 bits (67), Expect = 0.014
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +1

Query: 628 PHPPPXPXPXPPPPXPXXPPPPPPPPXXXPPXPPPPXPXXXPPXG 762
           PH  P       PP P   PPP  PP   PP   P      P  G
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPP-GAPPSQNPSQMMISPASG 70



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 646 PXPXPPPPXPXXPPPPPPPPXXXPPXPPPPXPXXXPP 756
           P    P P P     P  P    PP P    P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 26.2 bits (55), Expect = 0.40
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
 Frame = +1

Query: 646 PXPXPPPPXPXXPP---PPPPPPXXXPPXPPPPXPXXXPP 756
           P P P P      P    PP P    PP  PP  P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
 Frame = +1

Query: 685 PPPPPPPXXXPPXPP---PPXPXXXPPXG 762
           P P P P   P  P    PP P   PP G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
 Frame = +1

Query: 637 PPXPXPXPPPPXPXXPPPP----PPPPXXXPPXPPPP 735
           P    P P P     P  P    PP P   PP   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 625 PPHPPPXPXPXPPPPXPXXPPP 690
           PP+P   P P  PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
 Frame = +1

Query: 634 PPPXPXPXPPPP---XPXXPPPPPPPPXXXPPXPPPP 735
           PP    P PP P        PP P  P   P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 0.033
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
 Frame = -3

Query: 740 GXGGGGXGGXXXGGGGGG---GGXXGXGGGGXGXGXG 639
           G G    GG   G  GG    G   G GGGG G   G
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -3

Query: 740 GXGGGGXGGXXXGGGGGGGGXXGXGGGGXGXGXG 639
           G  G    G    G  GG    G   GG G G G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 755 GGXXXGXGGGGXGGXXXGGGGGGG 684
           GG   G  GG        GGGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = -3

Query: 704 GGGGGGGGXXGXGGGG--XGXGXGGGWGG 624
           G    GG   G  GG    G   GGG GG
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGG 51


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 637 PPXPXPXPPPPXPXXP 684
           PP P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 673 PXXPPPPPPPPXXXPP 720
           P  P PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 25.4 bits (53), Expect(2) = 0.11
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 664 PPXPXXPPPPP 696
           PP P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 855 PPXPXPPPXPP 887
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 646 PXPXPPPPXPXXPPP 690
           P P PPPP P    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect(2) = 0.24
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 285 PPPPPPXGXXPPPXK 329
           PPPPPP    P   K
Sbjct: 343 PPPPPPSSSGPDSAK 357



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 645 TPPXPPPPXXXPPXPPPPPPXXG 713
           TPP P P       PPPPP   G
Sbjct: 337 TPPKPAP-------PPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 700 PPXXXPPXPPP 732
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect(2) = 0.24
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 270 PFXXPPPPPP 299
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 0.11
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 718 PXPPPPXPXXXPP 756
           P PPPP P    P
Sbjct: 341 PAPPPPPPSSSGP 353


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 682  PPPPPPPP 705
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 681  PXPPPPPPXXG 713
            P PPPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 282  PPPPPPP 302
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 282  PPPPPPP 302
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 678  PPXPPPPP 701
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 282  PPPPPPPXG 308
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 666  PXXXPPXPPPPPP 704
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 667  PXPXXPPPPPPPP 705
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
 Frame = +1

Query: 625 PPHPPPXPXPXPPPPXPXXPPPPPPPPXXXP----PXPPPPXP 741
           P +  P   P P PP P     P   P        P P PP P
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 140



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
 Frame = +1

Query: 625 PPHPPPXPXPXPPPPXPXXPPPPPPPPXXXP----PXPPPPXP 741
           P +  P   P P PP P     P   P        P P PP P
Sbjct: 124 PGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,968
Number of Sequences: 438
Number of extensions: 10286
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)