Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C20
         (1077 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.14 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect(2) = 0.14
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 358 PPPPPPPXFXXXPQRGXFPRGGFPLFKKXRALXXGG 251
           PPPPPPP F    Q    P  G+   +K +     G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 25.0 bits (52), Expect(2) = 3.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 361 KPPPPPPPXF 332
           +PPPPPPP +
Sbjct: 23  QPPPPPPPGY 32



 Score = 22.2 bits (45), Expect(2) = 0.14
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 370 GXXKPPPPPP 341
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 20.6 bits (41), Expect(2) = 3.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 379 PKXGXXKPPPPPPP 338
           P  G   P  PPPP
Sbjct: 14  PPPGFEPPSQPPPP 27


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 4.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 360 NPPPPPP 340
           NPPPPPP
Sbjct: 188 NPPPPPP 194



 Score = 21.8 bits (44), Expect(2) = 4.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 357 PPPPPPXI 334
           PPPPPP +
Sbjct: 192 PPPPPPAV 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,679
Number of Sequences: 5004
Number of extensions: 24395
Number of successful extensions: 169
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)