Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C18
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       38   0.008
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    34   0.18 
04_03_0649 - 18402976-18403220,18403305-18404499                       33   0.24 
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     33   0.41 
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    29   3.8  
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866...    29   6.7  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +3

Query: 450 YNLLLXSQQARTAFINSRVLLAEXYGFXGIDLAWAVPKS*AXEDPVDLGIALAXXXXDI 626
           ++ +   +  R AFINS + LA   GF G+DLAW  P +    D  +LG  LA    +I
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFPAT--QLDMENLGDLLAEWRAEI 185


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 227 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 370
           PL+LDP      H+L  Y   +  TY LV     + +D  HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 477 ARTAFINSRVLLAEXYGFXGIDLAWAVPKS 566
           +R AFI + V +A   GF G+D+AW  P S
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFPAS 172


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = -3

Query: 404 YSETQGTWLSSW*SHGS-CRVFGLCPGSRL----RTPAYRCQAGYR---HSRTASGCR 255
           YS + G WL SW +    C + GLC  + +     TP   C  GY    H   + GC+
Sbjct: 264 YSLSNGEWLVSWVAISQPCNIHGLCGPNGICHYSPTPTCSCPPGYEMNSHGNWSQGCK 321


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = -3

Query: 398 ETQGTWLSSW*SHGS-CRVFGLCPGSRL----RTPAYRCQAGYRH---SRTASGCRTT 249
           E  GTWL SW +  + C + G+C  + +      P   C  GY     S  + GCR T
Sbjct: 282 EVAGTWLVSWMAFSNPCIIHGVCGANAVCLYSPAPVCVCAPGYARADPSDWSRGCRPT 339


>09_04_0745 +
           19884868-19886000,19886110-19886309,19886422-19886666,
           19886880-19887668
          Length = 788

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 670 KVHWPLVPXIANQALYPPXPXXXXPAXLVLPXXXFLQLTPNVAXPS 807
           ++H PL P     AL PP P    P    LP     QL P V  P+
Sbjct: 40  ELHEPLFPLENAPALPPPPPPPPAPFFPFLPDSAPPQLPPPVTTPA 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,398
Number of Sequences: 37544
Number of extensions: 407764
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)