Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_C17
(923 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 62 2e-08
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 52 2e-05
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 49 2e-04
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 48 3e-04
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 43 0.010
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 43 0.013
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 43 0.013
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 40 0.068
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 40 0.12
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 38 0.48
UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus subti... 37 0.63
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 37 0.84
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 35 2.6
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 35 3.4
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 33 7.8
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 275
+GQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 2.6
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 122 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 262
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 52.4 bits (120), Expect = 2e-05
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 272
RG TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
Score = 34.7 bits (76), Expect = 3.4
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2
Query: 125 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 262
P LA+V+KVLGRTGS+G V ++ RV + D S R GP R
Sbjct: 7 PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 275
RGQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 20 RGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 48.0 bits (109), Expect = 3e-04
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPV 254
+GQCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 24 QGQCTQVRVKFMDDTSRSIIRNVKGPV 50
Score = 34.3 bits (75), Expect = 4.5
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +2
Query: 122 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP 256
+P LARV KVLGRTGSQG ++ RV + D S R GP
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVKFMDDTSRSIIRNVKGP 49
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 43.2 bits (97), Expect = 0.010
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = +3
Query: 123 NPTFLLVS*KYSAVLVLRGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 272
N F++V+ K + RGQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 7 NSEFVIVT-KILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 42.7 bits (96), Expect = 0.013
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -1
Query: 311 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 180
+QPP R ++ EDVS+ R HV DD A + +EL HLS L
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSAL 99
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 42.7 bits (96), Expect = 0.013
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGP 251
RG TQV+VEF+ +TSR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 40.3 bits (90), Expect = 0.068
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGP 251
RG TQV+VEF+ + SR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 39.5 bits (88), Expect = 0.12
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Frame = +3
Query: 171 LRGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 272
+ G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 26 MAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 37.5 bits (83), Expect = 0.48
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Frame = +3
Query: 174 RGQCTQVKVEFIGE-----TSRQIIRNVKGPVRDGDILT 275
RG TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 53 RGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus
subtilis|Rep: VirD4-like protein - Bacillus subtilis
Length = 796
Score = 37.1 bits (82), Expect = 0.63
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = -1
Query: 290 FRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLAPENQYGRVLSRH 141
F FKKSE SV +RS +P++LT+ PNE + T +N GR + H
Sbjct: 569 FSFKKSETESVRERSLMLPEELTSIKPNETVVFRITKREDNN-GRGIVSH 617
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 36.7 bits (81), Expect = 0.84
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 269
RG T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 19 RGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 35.1 bits (77), Expect = 2.6
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +3
Query: 177 GQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 272
G QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 26 GGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 34.7 bits (76), Expect = 3.4
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +3
Query: 177 GQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 272
G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 34 GEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 33.5 bits (73), Expect = 7.8
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -2
Query: 265 SPSRTGPFTFLMI*RLVSPMNSTFT*VHWP 176
SP RTGP TF M RLVS ++ST T H P
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCP 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,786,160
Number of Sequences: 1657284
Number of extensions: 9920502
Number of successful extensions: 18074
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18070
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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