Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C17
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    52   9e-08
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    52   9e-08
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   8.6  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +3

Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 272
           RG  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 125 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 262
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +3

Query: 174 RGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 272
           RG  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 125 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 262
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 103 ISSLIQINTRAPKLACFGKAKS*EFPIVS 17
           +S    +N    K +CFGKA + E PI+S
Sbjct: 716 VSGTATLNLGNVKDSCFGKAFNVEIPIIS 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,783
Number of Sequences: 5004
Number of extensions: 40660
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)