Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C15
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      30   0.38 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   6.3  

>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 24/78 (30%), Positives = 35/78 (44%)
 Frame = +2

Query: 530 PPPLTSITKIDAXVRGGENPTGL*RYQAFPPXQAPLVRPSCFRPLAAYRDTCSAPFSPFR 709
           PP LTS   +D+     +NP+     +  PP   P +      P A+       P++PFR
Sbjct: 120 PPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPPPHL------PNASGSSVYQPPYTPFR 173

Query: 710 XSVAAFSXLPAVSISSFG 763
            SV+  S     SI+ FG
Sbjct: 174 -SVSTTSSSNDTSITPFG 190


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 600  KDTRRFPPXKLPSC-APPVSDPWPLTGIPVPPLSP 701
            K + + PP  LPS  APP+  P     +P+P  +P
Sbjct: 1016 KLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTP 1050



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 618  PPXKLPSCAPPVSDPWPLTGI-PVPPLS 698
            PP   PS APPV  P P  G+ PVPP S
Sbjct: 1189 PPVPPPSEAPPV--PKPSVGVPPVPPPS 1214



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 618  PPXKLPSCAPPVSDPWPLTGIPVPPLS 698
            PP  +PS APPV  P P +  PVP  S
Sbjct: 1032 PPIPVPSTAPPV--PIPTSTPPVPKSS 1056



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 618  PPXKLPSCAPPVSDPWPLTGIPVPPL 695
            PP   PS APPV  P P  G+P  P+
Sbjct: 1208 PPVPPPSTAPPV--PTPSAGLPPVPV 1231


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 703 RGERGGTGIPVSGQGSETGGAHEGSLXGGKRLV 605
           RG RGG G    G+G  +GG   G   GG +++
Sbjct: 44  RGGRGGRGGARGGRGGSSGG--RGGAKGGAKVI 74


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  NYRESLRFKYPRPR 58
           N+RES   KYPRPR
Sbjct: 81  NFRESAASKYPRPR 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,798
Number of Sequences: 5004
Number of extensions: 57679
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)