Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C15
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   1.9  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   1.9  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   1.9  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 582 KTRQDYKDTRRFPPXKLPSCAPPVSDPWPLTGIPVPPLSPLSGXAWP 722
           +T+  ++  R+ PP   P   PP     PL G   PP  P +G   P
Sbjct: 220 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 266


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 582 KTRQDYKDTRRFPPXKLPSCAPPVSDPWPLTGIPVPPLSPLSGXAWP 722
           +T+  ++  R+ PP   P   PP     PL G   PP  P +G   P
Sbjct: 241 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 287


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 582 KTRQDYKDTRRFPPXKLPSCAPPVSDPWPLTGIPVPPLSPLSGXAWP 722
           +T+  ++  R+ PP   P   PP     PL G   PP  P +G   P
Sbjct: 226 QTQNGFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPP 272


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 621 PXKLPSCAPPVSDPWPLTGIPVPPLSPLSGXAWPLSHXSR 740
           P  L    PP   P P+ G P PP  P  G   P S+ ++
Sbjct: 569 PQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMGPASNDAK 608


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 618 PPXKLPSCAPPVSDPWPLTGIPVPPLSPLSGXAWPLS 728
           PP   P C PP   P P+  IP PP  P      P++
Sbjct: 243 PPPPSPVCMPPPPPPCPMP-IPCPPPPPACSCPPPVT 278


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 618 PPXKLPSCAPPVSDPWPLTGIPVPPLSPL 704
           PP  +P+  P +  P P    PVPPLSPL
Sbjct: 154 PPTPIPTPVPILEPPPPPP--PVPPLSPL 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,739
Number of Sequences: 27780
Number of extensions: 367241
Number of successful extensions: 1039
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)