Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C14
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   142   6e-35
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   138   7e-34
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera...    27   3.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   7.6  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  142 bits (344), Expect = 6e-35
 Identities = 67/93 (72%), Positives = 77/93 (82%)
 Frame = +2

Query: 314 LFVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 493
           L ++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126

Query: 494 DAPMFVVGVXLEAYXPSFKVISNASCTTNCLAP 592
           DAPMFVVGV LE + PS KVISNASCTTNCLAP
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAP 159



 Score =   99 bits (238), Expect = 4e-22
 Identities = 47/64 (73%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
 Frame = +1

Query: 130 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 306
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 307 GFLV 318
           G LV
Sbjct: 65  GKLV 68


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  138 bits (335), Expect = 7e-34
 Identities = 65/93 (69%), Positives = 76/93 (81%)
 Frame = +2

Query: 314 LFVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 493
           L ++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126

Query: 494 DAPMFVVGVXLEAYXPSFKVISNASCTTNCLAP 592
           DAPM+VVGV  E + PS KVISNASCTTNCLAP
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAP 159



 Score =  102 bits (245), Expect = 5e-23
 Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
 Frame = +1

Query: 130 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 306
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 307 GFLV 318
           G LV
Sbjct: 65  GKLV 68


>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
           formyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 207

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 336 ILLPL-TNKESILNLNTALKTAMGGI 262
           +L+PL TNK  I+NL+ AL  A  GI
Sbjct: 107 VLIPLETNKIGIINLHPALPGAFNGI 132


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 324 LTNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 181
           L N+ESIL+L   L +     + E I++IV+   +D R     HLS L  +
Sbjct: 342 LQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,789
Number of Sequences: 5004
Number of extensions: 67560
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)