Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C13
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.96 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 666 APPPGXXPPPXXPPPPXAPXPPPXPP 743
           AP  G  P P   PPP    PP  PP
Sbjct: 33  APQRGSPPNPSQGPPPGG--PPGAPP 56



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +3

Query: 669 PPPGXXP--PPXXPPPPXAPXPPPXPPP 746
           P P   P  P    PP  +  PPP  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/38 (31%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
 Frame = +3

Query: 606 GXXXXXPXPPXXXXRXXNXXAPPPGXXPPPXXPP--PP 713
           G     P P            P P   PPP  PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 669 PPPGXXPPPXXPPPPXAPXPPPXPPP 746
           P P     P  P     P P   PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 547 PPPPXPXXPPPXXXPP 594
           PP P P  PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 702 PPPPXAPXPPP 734
           PP P  P PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 711 PXAPXPPPXPP 743
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 118 YLFSCLGYYR 147
           ++FSC+GYY+
Sbjct: 66  WIFSCIGYYK 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 705  PPPXAPXPPPXPP 743
            P   +P PPP PP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,949
Number of Sequences: 438
Number of extensions: 6755
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)