Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C12
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   5.0  
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.7  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 190 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALXEVFKKYCDKSAH 363
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS H
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 364 LKGCISSVL 390
           L+   + VL
Sbjct: 97  LREKFAQVL 105


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 686 PPXTXPHXTPRKPWAXXPDXAPSRXXPXPLPXPXXL-PKXKPXXPPXGP 829
           PP   P    R   A  P    SR    P+P P  L P   P  PP  P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
 Frame = +2

Query: 665 PPVS*XXPPXTXPHXTPRKPWAXXPDXAPSRXXPXPLPXPXXLP-KXKPXXPPXGPSFXR 841
           PP     PP   P   P       P  + SR    P   P  +P +  P  PP G +   
Sbjct: 354 PPQGRSAPPPPPPRSAP-STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRT 412

Query: 842 *XXXXPSP 865
                P+P
Sbjct: 413 STPPVPTP 420


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 686 PPXTXPHXTPRKPWAXXPDXAPSRXXPXPLPXPXXLPKXKPXXPPXGP 829
           PP      TP       P  AP    P P P P  +    P  PP  P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +1

Query: 361 HLKGCISSVLXGVRPCVGHDYANHINDAQNSTNQLIDFVC 480
           HL     S L  V  CVGH    + ND  +   QL+   C
Sbjct: 402 HLYSASRSPLTKVIDCVGHAVTKNNNDVLSGLQQLMQEEC 441


>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 453 YQSTHRLCVLQGRRPDCFVHPRKAALSASSXK 548
           YQ   ++ VL     D F+HP +A     S K
Sbjct: 45  YQKNEKVVVLDEEDADAFLHPEEAEAKKESEK 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,200
Number of Sequences: 5004
Number of extensions: 51231
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)