Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C12
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 716 RKPWAXXPDXAPSRXXPXPLPXPXXLPKXKPXXPPXGPS 832
           ++P        PS   P P P P   P+      P  PS
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPS 43


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 474 CVLQGRRPDCFVHPRKAALSASSXKTE 554
           C+  G RP+C V   + A+     K +
Sbjct: 44  CLTVGMRPECMVPEYQCAVKRKEKKAQ 70


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 474 CVLQGRRPDCFVHPRKAALSASSXKTE 554
           C+  G RP+C V   + A+     K +
Sbjct: 247 CLTVGMRPECVVPEYQCAVKRKEEKAQ 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,891
Number of Sequences: 438
Number of extensions: 4492
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)