Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C11
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   168   4e-42
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    36   0.041
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    36   0.041
Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  168 bits (409), Expect = 4e-42
 Identities = 84/123 (68%), Positives = 95/123 (77%)
 Frame = +2

Query: 98  AGAKFPYLPGSPSGSSNQLRRQHRXQRICM*SLSKGIKGRLNRLPAAGSGDMIVATVKKG 277
           +GAKF    G P G+          + + + S+  GI+GRLNRLP+AG GDM V +VKKG
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNTGAKNLFVISVY-GIRGRLNRLPSAGVGDMFVCSVKKG 68

Query: 278 KPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL 457
           KPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL
Sbjct: 69  KPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADL 128

Query: 458 WPR 466
           WPR
Sbjct: 129 WPR 131


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 492 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 626
           LE  F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 492 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 626
           LE  F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 490


>Z75541-7|CAI79201.1|  197|Caenorhabditis elegans Hypothetical
           protein F52B5.5b protein.
          Length = 197

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 504 FKISNCVSLSFPSTSKSNPKNYNLRNRHL-QCKCAKLEYTFM 626
           F ++N  +   PSTS S+P N N R R L +C     +YT M
Sbjct: 2   FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYTMM 43


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 523 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 392
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,790
Number of Sequences: 27780
Number of extensions: 343536
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)