Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_C07
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.40 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.52 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.71 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 822 PPXPPRXXPPXXPPPXPP 875
           PP P +  PP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +3

Query: 762 PPPPPPLXXXXXXXKXXTXPPPXPPRXXPPXXPPPXPP 875
           P P P              P   PP   PP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect(2) = 0.52
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 763 PPPPPPS 783
           PPPPPPS
Sbjct: 343 PPPPPPS 349



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 760 PPPPPPPS 783
           PPPPPP S
Sbjct: 343 PPPPPPSS 350



 Score = 21.4 bits (43), Expect(2) = 0.52
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 748 TXXXPPPPPPP 780
           T   P PPPPP
Sbjct: 337 TPPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 760  PPPPPPPS 783
            PPPPPPPS
Sbjct: 1356 PPPPPPPS 1363



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 760  PPPPPPP 780
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 760  PPPPPPPS 783
            PPPPPP S
Sbjct: 1357 PPPPPPSS 1364


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 874 GGXGGGXXGGXXRGGXGGG 818
           G  GG    G   GG GGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 82  PHFXRKLKNPNSLRNFPLLV 23
           PHF  KLKN  + R  P ++
Sbjct: 777 PHFEIKLKNQTARRGEPAVL 796


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,621
Number of Sequences: 438
Number of extensions: 6286
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)